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  1. Article

    Open Access

    Diversity in bread and durum wheat stigma morphology and linkage of increased stigma length to dwarfing gene Rht14

    The dwarfing allele Rht14 of durum wheat associates with greater stigma length, an important trait for hybrid breeding, whilst major dwarfing alleles Rht-B1b and Rht-D1b showed little to no effect.

    Margaret Pallotta, Takashi Okada, Stuart Roy in Theoretical and Applied Genetics (2024)

  2. Article

    Open Access

    Nested association map**-based GWAS for grain yield and related traits in wheat grown under diverse Australian environments

    Utilising a nested association map** (NAM) population-based GWAS, 98 stable marker-trait associations with 127 alleles unique to the exotic parents were detected for grain yield and related traits in wheat.

    Charity Chidzanga, Daniel Mullan, Stuart Roy in Theoretical and Applied Genetics (2022)

  3. Article

    Open Access

    A targeted bioinformatics approach identifies highly variable cell surface proteins that are unique to Glomeromycotina

    Diversity in arbuscular mycorrhizal fungi (AMF) contributes to biodiversity and resilience in natural environments and healthy agricultural systems. Functional complementarity exists among species of AMF in sy...

    Carolyn J. Schultz, Yue Wu, Ute Baumann in Mycorrhiza (2022)

  4. No Access

    Article

    The genetics of vigour-related traits in chickpea (Cicer arietinum L.): insights from genomic data

    QTL controlling vigour and related traits were identified in a chickpea RIL population and validated in diverse sets of germplasm. Robust KASP markers were developed for marker-assisted selection.

    Duong T. Nguyen, Julie E. Hayes, Judith Atieno in Theoretical and Applied Genetics (2022)

  5. Article

    Open Access

    Correction to: QTL analysis and fine map** of a QTL for yield‑related traits in wheat grown in dry and hot environments

    A correction to this paper has been published: https://doi.org/10.1007/s00122-021-03792-4

    Habtamu Tura, James Edwards, Vijay Gahlaut in Theoretical and Applied Genetics (2021)

  6. Article

    Open Access

    Ph2 encodes the mismatch repair protein MSH7-3D that inhibits wheat homoeologous recombination

    Meiotic recombination is a critical process for plant breeding, as it creates novel allele combinations that can be exploited for crop improvement. In wheat, a complex allohexaploid that has a diploid-like beh...

    Heïdi Serra, Radim Svačina, Ute Baumann, Ryan Whitford, Tim Sutton in Nature Communications (2021)

  7. Article

    Open Access

    QTL analysis and fine map** of a QTL for yield-related traits in wheat grown in dry and hot environments

    Genetic control of grain yield and phenology was examined in the Excalibur/Kukri doubled haploid map** population grown in 32 field experiments across the climatic zones of southern Australia, India and nort...

    Habtamu Tura, James Edwards, Vijay Gahlaut in Theoretical and Applied Genetics (2020)

  8. Article

    Open Access

    Genome-wide identification and characterization of the GDP-L-galactose phosphorylase gene family in bread wheat

    Ascorbate is a powerful antioxidant in plants and an essential micronutrient for humans. The GDP-L-galactose phosphorylase (GGP) gene encodes the rate-limiting enzyme of the L-galactose pathway—the dominant ascor...

    Ronan C. Broad, Julien P. Bonneau, Jesse T. Beasley, Sally Roden in BMC Plant Biology (2019)

  9. Article

    Open Access

    gRNA validation for wheat genome editing with the CRISPR-Cas9 system

    The CRISPR-Cas9 system is a powerful and versatile tool for crop genome editing. However, achieving highly efficient and specific editing in polyploid species can be a challenge. The efficiency and specificity...

    Taj Arndell, Niharika Sharma, Peter Langridge, Ute Baumann in BMC Biotechnology (2019)

  10. No Access

    Article

    Effects of Rht-B1 and Ppd-D1 loci on pollinator traits in wheat

    Elite wheat pollinators are critical for successful hybrid breeding. We identified Rht-B1 and Ppd-D1 loci affecting multiple pollinator traits and therefore represent major targets for improving hybrid seed produ...

    Takashi Okada, J. E. A. Ridma M. Jayasinghe in Theoretical and Applied Genetics (2019)

  11. Article

    Open Access

    Opposite fates of the purine metabolite allantoin under water and nitrogen limitations in bread wheat

    Degradation of nitrogen-rich purines is tightly and oppositely regulated under drought and low nitrogen supply in bread wheat. Allantoin is a key target metabolite for improving nitrogen homeostasis under stress.

    Alberto Casartelli, Vanessa J. Melino, Ute Baumann in Plant Molecular Biology (2019)

  12. Article

    Open Access

    DAWN: a resource for yielding insights into the diversity among wheat genomes

    Democratising the growing body of whole genome sequencing data available for Triticum aestivum (bread wheat) has been impeded by the lack of a genome reference and the large computational requirements for analysi...

    Nathan S. Watson-Haigh, Radosław Suchecki, Elena Kalashyan, Melissa Garcia in BMC Genomics (2018)

  13. Article

    Open Access

    Wheat TaMs1 is a glycosylphosphatidylinositol-anchored lipid transfer protein necessary for pollen development

    In flowering plants, lipid biosynthesis and transport within anthers is essential for male reproductive success. TaMs1, a dominant wheat fertility gene located on chromosome 4BS, has been previously fine mapped a...

    Allan Kouidri, Ute Baumann, Takashi Okada, Mathieu Baes in BMC Plant Biology (2018)

  14. Article

    Open Access

    Genome-wide identification and analysis of non-specific Lipid Transfer Proteins in hexaploid wheat

    Non-specific Lipid Transfer Proteins (nsLTPs) are involved in numerous biological processes. To date, only a fraction of wheat (Triticum aestivum L.) nsLTPs (TaLTPs) have been identified, and even fewer have been...

    Allan Kouidri, Ryan Whitford, Radoslaw Suchecki, Elena Kalashyan in Scientific Reports (2018)

  15. Article

    Open Access

    Optical and physical map** with local finishing enables megabase-scale resolution of agronomically important regions in the wheat genome

    Numerous scaffold-level sequences for wheat are now being released and, in this context, we report on a strategy for improving the overall assembly to a level comparable to that of the human genome.

    Gabriel Keeble-Gagnère, Philippe Rigault, Josquin Tibbits, Raj Pasam in Genome Biology (2018)

  16. Article

    Open Access

    Allelic variants of OsSUB1A cause differential expression of transcription factor genes in response to submergence in rice

    Flooding during seasonal monsoons affects millions of hectares of rice-cultivated areas across Asia. Submerged rice plants die within a week due to lack of oxygen, light and excessive elongation growth to esca...

    Niharika Sharma, Trang Minh Dang, Namrata Singh, Slobodan Ruzicic in Rice (2018)

  17. Article

    Open Access

    POTAGE: A Visualisation Tool for Speeding up Gene Discovery in Wheat

    POPSEQ Ordered Triticum aestivum Gene Expression (POTAGE) is a web application which accelerates the process of identifying candidate genes for quantitative trait loci (QTL) in hexaploid wheat. This is achieved b...

    Radosław Suchecki, Nathan S. Watson-Haigh, Ute Baumann in Scientific Reports (2017)

  18. Article

    Open Access

    Molecular identification of the wheat male fertility gene Ms1 and its prospects for hybrid breeding

    The current rate of yield gain in crops is insufficient to meet the predicted demands. Capturing the yield boost from heterosis is one of the few technologies that offers rapid gain. Hybrids are widely used fo...

    Elise J. Tucker, Ute Baumann, Allan Kouidri, Radoslaw Suchecki in Nature Communications (2017)

  19. No Access

    Article

    Nitrogen assimilation system in maize is regulated by developmental and tissue-specific mechanisms

    We found metabolites, enzyme activities and enzyme transcript abundances vary significantly across the maize lifecycle, but weak correlation exists between the three groups. We identified putative genes regula...

    Darren Plett, Luke Holtham, Ute Baumann, Elena Kalashyan in Plant Molecular Biology (2016)

  20. No Access

    Article

    Molecular interactions of the γ-clade homeodomain-leucine zipper class I transcription factors during the wheat response to water deficit

    The γ-clade of class I homeodomain-leucine zipper (HD-Zip I) transcription factors (TFs) constitute members which play a role in adapting plant growth to conditions of water deficit. Given the importance of wh...

    John C. Harris, Pradeep Sornaraj, Mathew Taylor in Plant Molecular Biology (2016)

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