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    Article

    Immune signature of pheochromocytoma and paraganglioma in context of neuroendocrine neoplasms associated with prognosis

    To understand prognostic immune cell infiltration signatures in neuroendocrine neoplasms (NENs), particularly pheochromocytoma and paraganglioma (PCPG), we analyzed tumor transcriptomic data from The Cancer Ge...

    Suman Ghosal, Katerina Hadrava Vanova, Ondrej Uher, Shaoli Das, Mayank Patel in Endocrine (2023)

  2. Article

    Open Access

    Glioblastoma cells have increased capacity to repair radiation-induced DNA damage after migration to the olfactory bulb

    The invasive nature of GBM combined with the diversity of brain microenvironments creates the potential for a topographic heterogeneity in GBM radioresponse. Investigating the mechanisms responsible for a micr...

    Charlotte Degorre, Ian C. Sutton, Stacey L. Lehman in Cancer Cell International (2022)

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    Article

    A long noncoding RNA–microRNA expression signature predicts metastatic signature in pheochromocytomas and paragangliomas

    In hopes of discovering new markers for metastatic or aggressive phenotypes of pheochromocytomas and paragangliomas (PCPG), we analyzed the noncoding transcriptome from patient gene expression data in The Canc...

    Suman Ghosal, Boqun Zhu, Thanh-Truc Huynh, Leah Meuter, Abhishek Jha in Endocrine (2022)

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    Article

    Detection of glioblastoma intratumor heterogeneity in radiosensitivity using patient-derived neurosphere cultures

    Glioblastoma (GBM) is characterized by extensive clonal diversity suggesting the presence of tumor cells with varying degrees of treatment sensitivity. Radiotherapy is an integral part of glioblastoma treatmen...

    Joseph H. McAbee, Charlotte Degorre-Kerbaul, Kristin Valdez in Journal of Neuro-Oncology (2020)

  5. Article

    Open Access

    Evaluation of the fullerene compound DF-1 as a radiation protector

    Fullerene compounds are known to possess antioxidant properties, a common property of chemical radioprotectors. DF-1 is a dendrofullerene nanoparticle with antioxidant properties previously found to be radiopr...

    Aaron P Brown, Eun Joo Chung, Mary Ellen Urick, William P Shield III in Radiation Oncology (2010)

  6. Article

    Open Access

    CellMiner: a relational database and query tool for the NCI-60 cancer cell lines

    Advances in the high-throughput omic technologies have made it possible to profile cells in a large number of ways at the DNA, RNA, protein, chromosomal, functional, and pharmacological levels. A persistent pr...

    Uma T Shankavaram, Sudhir Varma, David Kane, Margot Sunshine in BMC Genomics (2009)

  7. Article

    Towards understanding the first genome sequence of a crenarchaeon by genome annotation using clusters of orthologous groups of proteins (COGs)

    Standard archival sequence databases have not been designed as tools for genome annotation and are far from being optimal for this purpose. We used the database of Clusters of Orthologous Groups of proteins (C...

    Darren A Natale, Uma T Shankavaram, Michael Y Galperin, Yuri I Wolf in Genome Biology (2000)

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    Chapter

    Insulin Like Growth Factor 1 Receptor Signal Transduction to the Nucleus

    The IGF-1 receptor (IGF-1R) is a member of the tyrosine kinase class of cell surface receptors which become autophosphorylated on tyrosyl residues upon ligand binding (Czech, 1989). It has striking homology to...

    Steven A. Rosenzweig, Barry S. Oemar in Current Directions in Insulin-Like Growth … (1993)