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  1. Article

    Open Access

    Transcriptomic and free monoterpene analyses of aroma reveal that isopentenyl diphosphate isomerase inhibits monoterpene biosynthesis in grape (Vitis vinifera L.)

    Monoterpenes are among the most important volatile aromatic compounds contributing to the flavor and aroma of grapes and wine. However, the molecular basis of monoterpene biosynthesis has not yet been fully el...

    Tianchi Chen, Tao Xu, **nan Wang, Tianye Zhang, ** Yang, Lixiao Feng in BMC Plant Biology (2024)

  2. Article

    Open Access

    Author Correction: A papain-like cysteine protease-released small signal peptide confers wheat resistance to wheat yellow mosaic virus

    Peng Liu, Chaonan Shi, Shuang Liu, Jiajia Lei, Qisen Lu in Nature Communications (2024)

  3. Article

    Open Access

    A papain-like cysteine protease-released small signal peptide confers wheat resistance to wheat yellow mosaic virus

    Wheat yellow mosaic virus (WYMV), a soil-borne pathogen, poses a serious threat to global wheat production. Here, we identify a WYMV resistance gene, TaRD21A, that belongs to the papain-like cysteine protease fam...

    Peng Liu, Chaonan Shi, Shuang Liu, Jiajia Lei, Qisen Lu in Nature Communications (2023)

  4. No Access

    Article

    Molecular characterization of a novel benyvirus infecting wheat in China

    In this study, a novel positive single-stranded RNA (+ ssRNA) virus named wheat yellow stripe associated virus (WYSAV) was identified in wheat plants in China. Molecular characterization revealed that the comp...

    Jun Guo, **gliang Yin, Haichao Hu, Tianye Zhang, Zhuangxin Ye in Archives of Virology (2023)

  5. Article

    Open Access

    Chromatin accessibility dynamics dictate renal tubular epithelial cell response to injury

    Renal tubular epithelial cells (TECs) can initiate an adaptive response to completely recover from mild acute kidney injury (AKI), whereas severe injury often leads to persistence of maladaptive repair and pro...

    **nyi Cao, Jiuchen Wang, Tianye Zhang, Zhiheng Liu, Lijun Liu in Nature Communications (2022)

  6. Article

    Open Access

    N6-methyladenosine RNA modification promotes viral genomic RNA stability and infection

    Molecular manipulation of susceptibility (S) genes that are antipodes to resistance (R) genes has been adopted as an alternative strategy for controlling crop diseases. Here, we show the S gene encoding Triticum ...

    Tianye Zhang, Chaonan Shi, Haichao Hu, Zhuo Zhang, Ziqiong Wang in Nature Communications (2022)

  7. Article

    Open Access

    Advances in understanding the soil-borne viruses of wheat: from the laboratory bench to strategies for disease control in the field

    In China, soil-borne viruses transmitted by the root parasite Polymyxa graminis have caused significant yield loss in winter wheat for many years. At present, it is believed that two main soil-borne RNA viruses, ...

    Jian Yang, Peng Liu, Kaili Zhong, Tida Ge, Lu Chen, Haichao Hu in Phytopathology Research (2022)

  8. No Access

    Article

    ER stress–related protein, CHOP, may serve as a biomarker of mechanical asphyxia: a primary study

    The precise authentication of death from mechanical asphyxia (DMA) has been a complex problem in forensic medicine. Besides the traditional methods that concern the superficial characterization of the body, re...

    Yikai Hu, Lu Tian, Kaijun Ma, Liujun Han in International Journal of Legal Medicine (2022)

  9. No Access

    Article

    Genetic background and cis-organization regulate ALDH7B4 gene expression in Eutrema salsugineum: a promoter analysis case study

    ALDH7B4 promoter analysis in A. thaliana and E. salsugineum reveals that both genetic background and promoter architecture contribute to gene expression in response to stress in different species.

    Quancan Hou, Tianye Zhang, Wei Zhao, Linlin Wang, Lu Lu, Yuchen Qi in Planta (2022)

  10. No Access

    Article

    FaultTracer: interactive visual exploration of fault propagation patterns in power grid simulation data

    The modern power grids are vulnerable to faults. Without proper management and control methods, a single fault could result in the entire malfunction of the power grid, resulting in huge economic loss. Power g...

    Tianye Zhang, Zexian Chen, Zhe Zhao, **aonan Luo, Wenting Zheng in Journal of Visualization (2021)

  11. No Access

    Article

    EcoVis: visual analysis of industrial-level spatio-temporal correlations in electricity consumption

    Closely related to the economy, the analysis and management of electricity consumption has been widely studied. Conventional approaches mainly focus on the prediction and anomaly detection of electricity consu...

    Yong **ao, Kaihong Zheng, Supaporn Lonapalawong, Wenjie Lu in Frontiers of Computer Science (2021)

  12. No Access

    Article

    WaveLines: towards effective visualization and analysis of stability in power grid simulation

    Closely related to the safety and stability of power grids, stability analysis has long been a core topic in the electric industry. Conventional approaches employ computational simulation to make the quantitat...

    Tianye Zhang, Qi Wang, Liwen Lin, Jiazhi **a, **wang Xu in Frontiers of Computer Science (2021)

  13. Article

    Open Access

    Genome-wide identification of the histone acetyltransferase gene family in Triticum aestivum

    Histone acetylation is a ubiquitous and reversible post-translational modification in eukaryotes and prokaryotes that is co-regulated by histone acetyltransferase (HAT) and histone deacetylase (HDAC). HAT acti...

    Shiqi Gao, Linzhi Li, **aolei Han, Tingting Liu, Peng **, Linna Cai in BMC Genomics (2021)

  14. No Access

    Article

    A systematic literature review of modern software visualization

    We report on the state-of-the-art of software visualization. To ensure reproducibility, we adopted the Systematic Literature Review methodology. That is, we analyzed 1440 entries from IEEE Xplore and ACM Digit...

    Noptanit Chotisarn, Leonel Merino, Xu Zheng in Journal of Visualization (2020)

  15. Article

    Open Access

    A 3D Printed Hanging Drop Dripper for Tumor Spheroids Analysis Without Recovery

    Compared with traditional monolayer cell culture, the three-dimensional tumor spheroid has emerged as an essential in vitro model for cancer research due to the recapitulation of the architecture and physiology o...

    Liang Zhao, Jidong **u, Yang Liu, Tianye Zhang, Wenjie Pan in Scientific Reports (2019)

  16. No Access

    Article

    A survey of network anomaly visualization

    Network anomaly analysis is an emerging subtopic of network security. Network anomaly refers to the unusual behavior of network devices or suspicious network status. A number of intelligent visual tools are de...

    Tianye Zhang, Xumeng Wang, Zongzhuang Li in Science China Information Sciences (2017)