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  1. No Access

    Article

    Deep learning model to predict Ki-67 expression of breast cancer using digital breast tomosynthesis

    Develo** a deep learning (DL) model for digital breast tomosynthesis (DBT) images to predict Ki-67 expression.

    Ken Oba, Maki Adachi, Tomoya Kobayashi, Eichi Takaya, Daiki Shimokawa in Breast Cancer (2024)

  2. No Access

    Article

    Postoperative management using a digital drainage system for massive air leakage after pulmonary resection

    To elucidate clinical outcomes using a digital drainage system (DDS) for massive air leakage (MAL) after pulmonary resection.

    Takuya Ueda, Kazuya Takamochi, Aritoshi Hattori, Mariko Fukui in Surgery Today (2024)

  3. Article

    Open Access

    Intensive care unit mortality and cost-effectiveness associated with intensivist staffing: a Japanese nationwide observational study

    Japan has four types of intensive care units (ICUs) that are divided into two categories according to the management fee charged per day: ICU management fees 1 and 2 (ICU1/2) (equivalent to high-intensity staf...

    Saori Ikumi, Takuya Shiga, Takuya Ueda, Eichi Takaya in Journal of Intensive Care (2023)

  4. No Access

    Article

    Deep learning model for predicting the presence of stromal invasion of breast cancer on digital breast tomosynthesis

    To develop a deep learning (DL)-based algorithm to predict the presence of stromal invasion in breast cancer using digital breast tomosynthesis (DBT). Our institutional review board approved this retrospective...

    Daiki Shimokawa, Kengo Takahashi, Ken Oba in Radiological Physics and Technology (2023)

  5. No Access

    Article

    Deep learning model for breast cancer diagnosis based on bilateral asymmetrical detection (BilAD) in digital breast tomosynthesis images

    The purpose of this study was to develop a deep learning model to diagnose breast cancer by embedding a diagnostic algorithm that examines the asymmetry of bilateral breast tissue. This retrospective study was...

    Daiki Shimokawa, Kengo Takahashi, Daiya Kurosawa in Radiological Physics and Technology (2023)

  6. Article

    Open Access

    Significance of systolic-phase imaging on full-phase ECG-gated CT angiography to detect intimal tears in aortic dissection

    For patients with aortic dissection (AD) and intramural hematoma (IMH), the optimal cardiac phase to detect intimal tears (IT) and ulcer-like projections (ULP) on retrospective electrocardiogram (ECG)-gated co...

    Satoru Yanagaki, Atsuro Masuda, Hideki Ota, Masatoshi Kojima in Heart and Vessels (2022)

  7. Article

    Open Access

    Systemic-pulmonary collateral supply associated with clinical severity of chronic thromboembolic pulmonary hypertension: a study using intra-aortic computed tomography angiography

    To assess whether systemic-pulmonary collaterals are associated with clinical severity and extent of pulmonary perfusion defects in chronic thromboembolic pulmonary hypertension (CTEPH).

    Wenyu Sun, Hideki Ota, Haruka Sato, Saori Yamamoto, Shunsuke Tatebe in European Radiology (2022)

  8. Chapter and Conference Paper

    Numerical Study for Blood Flows in Thoracic Aorta

    Numerical simulations for blood flows related to cardiovascular diseases are presented. Differences in vessel morphologies produce different flow characteristics, stress distributions, and ultimately different...

    Hiroshi Suito, Koki Otera, Viet Q. H. Huynh in Recent Advances in Industrial and Applied … (2022)

  9. Article

    Open Access

    Detection of the intimal tear in aortic dissection and ulcer-like projection in intramural hematoma: usefulness of full-phase retrospective ECG-gated CT angiography

    To compare the accuracy of non-electrocardiogram (ECG)-gated CT angiography (CTA), single-diastolic-phase ECG-gated CTA, and full-phase ECG-gated CTA in detecting the intimal tear (IT) in aortic dissection (AD...

    Satoru Yanagaki, Takuya Ueda, Atsuro Masuda, Hideki Ota in Japanese Journal of Radiology (2020)

  10. Article

    Open Access

    The level of antimicrobial resistance of sewage isolates is higher than that of river isolates in different Escherichia coli lineages

    The dissemination of antimicrobial-resistant bacteria in environmental water is an emerging concern in medical and industrial settings. Here, we analysed the antimicrobial resistance of Escherichia coli isolates ...

    Yoshitoshi Ogura, Takuya Ueda, Kei Nukazawa, Hayate Hiroki, Hui **e in Scientific Reports (2020)

  11. Article

    Open Access

    Reconstituted cell-free protein synthesis using in vitro transcribed tRNAs

    Entire reconstitution of tRNAs for active protein production in a cell-free system brings flexibility into the genetic code engineering. It can also contribute to the field of cell-free synthetic biology, whic...

    Keita Hibi, Kazuaki Amikura, Naoki Sugiura, Keiko Masuda in Communications Biology (2020)

  12. No Access

    Article

    Delayed cut-end recurrence after wedge resection for pulmonary ground-glass opacity adenocarcinoma despite negative surgical margin

    Most pulmonary ground-glass opacity (GGO) nodules are pathologically well differentiated adenocarcinomas. We performed a limited resection trial of GGO lesions 2 cm or smaller from 2003 to 2009, in which 95 pa...

    Keigo Sekihara, Junji Yoshida, Makoto Oda in General Thoracic and Cardiovascular Surgery (2020)

  13. Article

    Open Access

    In vitro reconstitution of functional small ribosomal subunit assembly for comprehensive analysis of ribosomal elements in E. coli

    In vitro reconstitution is a powerful tool for investigating ribosome functions and biogenesis, as well as discovering new ribosomal features. In this study, we integrated all of the processes required for Escher...

    Masaru Shimojo, Kazuaki Amikura, Keiko Masuda, Takashi Kanamori in Communications Biology (2020)

  14. Article

    Open Access

    Artificial photosynthetic cell producing energy for protein synthesis

    Attempts to construct an artificial cell have widened our understanding of living organisms. Many intracellular systems have been reconstructed by assembling molecules, however the mechanism to synthesize its ...

    Samuel Berhanu, Takuya Ueda, Yutetsu Kuruma in Nature Communications (2019)

  15. Article

    Open Access

    CdsA is involved in biosynthesis of glycolipid MPIase essential for membrane protein integration in vivo

    MPIase is a glycolipid that is involved in membrane protein integration. Despite evaluation of its functions in vitro, the lack of information on MPIase biosynthesis hampered verification of its involvement in vi...

    Katsuhiro Sawasato, Ryo Sato, Hanako Nishikawa, Naoki Iimura in Scientific Reports (2019)

  16. No Access

    Article

    Construction of integrated gene logic-chip

    In synthetic biology, the control of gene expression requires a multistep processing of biological signals. The key steps are sensing the environment, computing information and outputting products1. To achieve su...

    Takeya Masubuchi, Masayuki Endo, Ryo Iizuka, Ayaka Iguchi in Nature Nanotechnology (2018)

  17. No Access

    Article

    Immunosuppressive tumor microenvironment of usual interstitial pneumonia-associated squamous cell carcinoma of the lung

    Patients with usual interstitial pneumonia (UIP) often develop lung cancer. However, the biological features of lung cancer associated with UIP remain unknown. The aim of this study was to elucidate the clinic...

    Takuya Ueda, Keiju Aokage in Journal of Cancer Research and Clinical On… (2018)

  18. Article

    Correction to: Postoperative atrial fibrillation is less frequent in pulmonary segmentectomy compared with lobectomy

    In the original publication of this article, the Table 1 was published incorrectly with missing data.

    Takuya Ueda, Kenji Suzuki, Takeshi Matsunaga in General Thoracic and Cardiovascular Surgery (2018)

  19. No Access

    Article

    Postoperative atrial fibrillation is less frequent in pulmonary segmentectomy compared with lobectomy

    The aim of this study was to elucidate the characteristics and predictors of postoperative atrial fibrillation (POAF) from the standpoint of surgical mode.

    Takuya Ueda, Kenji Suzuki, Takeshi Matsunaga in General Thoracic and Cardiovascular Surgery (2018)

  20. Article

    Open Access

    Large-scale aggregation analysis of eukaryotic proteins reveals an involvement of intrinsically disordered regions in protein folding

    A subset of the proteome is prone to aggregate formation, which is prevented by chaperones in the cell. To investigate whether the basic principle underlying the aggregation process is common in prokaryotes an...

    Eri Uemura, Tatsuya Niwa, Shintaro Minami, Kazuhiro Takemoto in Scientific Reports (2018)

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