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Article
Multiplexed proteome analysis with neutron-encoded stable isotope labeling in cells and mice
This NeuCode SILAC/SILAM protocol uses neutron-coded lysine derivatives to improve stable isotope labeling of amino acids in cells or mice, enabling multiplexed comparison of proteomes from different samples b...
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Article
The MaxQuant computational platform for mass spectrometry-based shotgun proteomics
MaxQuant is a platform for mass spectrometry-based proteomics data analysis. It includes a peptide database search engine, called Andromeda, and expanding capability to handle data from most quantitative prote...
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Article
The Perseus computational platform for comprehensive analysis of (prote)omics data
Perseus is a comprehensive, user-friendly software platform for the biological analysis of quantitative proteomics data. It is intended to help biologists with little bioinformatics training to interpret prote...
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Article
Cell type– and brain region–resolved mouse brain proteome
The authors performed a comprehensive proteome analysis of the adult mouse brain, its major regions and CNS cell types at a depth of >13,000 proteins. This new resource represents the largest collection of cel...