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  1. Article

    Open Access

    Mycobacterium abscessus pathogenesis identified by phenogenomic analyses

    The medical and scientific response to emerging and established pathogens is often severely hampered by ignorance of the genetic determinants of virulence, drug resistance and clinical outcomes that could be u...

    Lucas Boeck, Sophie Burbaud, Marcin Skwark, Will H. Pearson in Nature Microbiology (2022)

  2. Article

    Open Access

    Assessment of protein–protein interfaces in cryo-EM derived assemblies

    Structures of macromolecular assemblies derived from cryo-EM maps often contain errors that become more abundant with decreasing resolution. Despite efforts in the cryo-EM community to develop metrics for map ...

    Sony Malhotra, Agnel Praveen Joseph, Jeyan Thiyagalingam in Nature Communications (2021)

  3. Article

    Open Access

    Identification and Characterization of Genetic Determinants of Isoniazid and Rifampicin Resistance in Mycobacterium tuberculosis in Southern India

    Drug-resistant tuberculosis (TB), one of the leading causes of death worldwide, arises mainly from spontaneous mutations in the genome of Mycobacterium tuberculosis. There is an urgent need to understand the mech...

    Asma Munir, Narender Kumar, Suresh Babu Ramalingam in Scientific Reports (2019)

  4. Article

    Open Access

    Publisher Correction: Structural Implications of Mutations Conferring Rifampin Resistance in Mycobacterium leprae

    A correction to this article has been published and is linked from the HTML and PDF versions of this paper. The error has not been fixed in the paper.

    Sundeep Chaitanya Vedithi, Sony Malhotra, Madhusmita Das in Scientific Reports (2018)

  5. Article

    Open Access

    Structural Implications of Mutations Conferring Rifampin Resistance in Mycobacterium leprae

    The rpoB gene encodes the β subunit of RNA polymerase holoenzyme in Mycobacterium leprae (M. leprae). Missense mutations in the rpoB gene were identified as etiological factors for rifampin resistance in leprosy....

    Sundeep Chaitanya Vedithi, Sony Malhotra, Madhusmita Das in Scientific Reports (2018)

  6. Article

    Open Access

    Genome sequencing of herb Tulsi (Ocimum tenuiflorum) unravels key genes behind its strong medicinal properties

    Krishna Tulsi, a member of Lamiaceae family, is a herb well known for its spiritual, religious and medicinal importance in India. The common name of this plant is ‘Tulsi’ (or ‘Tulasi’ or ‘Thulasi’) and is cons...

    Atul K. Upadhyay, Anita R. Chacko, A. Gandhimathi, Pritha Ghosh in BMC Plant Biology (2015)

  7. Article

    Open Access

    DOCKSCORE: a webserver for ranking protein-protein docked poses

    Proteins interact with a variety of other molecules such as nucleic acids, small molecules and other proteins inside the cell. Structure-determination of protein-protein complexes is challenging due to several...

    Sony Malhotra, Oommen K Mathew, Ramanathan Sowdhamini in BMC Bioinformatics (2015)

  8. Article

    Open Access

    Sequence search and analysis of gene products containing RNA recognition motifs in the human genome

    Gene expression is tightly regulated at both transcriptional and post-transcriptional levels. RNA-binding proteins are involved in post-transcriptional gene regulation events. They are involved in a variety of...

    Sony Malhotra, Ramanathan Sowdhamini in BMC Genomics (2014)

  9. Article

    Open Access

    Re-visiting protein-centric two-tier classification of existing DNA-protein complexes

    Precise DNA-protein interactions play most important and vital role in maintaining the normal physiological functioning of the cell, as it controls many high fidelity cellular processes. Detailed study of the ...

    Sony Malhotra, Ramanathan Sowdhamini in BMC Bioinformatics (2012)