4 Result(s)

Article

tappAS: a comprehensive computational framework for the analysis of the functional impact of differential splicing

Recent advances in long-read sequencing solve inaccuracies in alternative transcript identification of full-length transcripts in short-read RNA-Seq data, which encourages the development of methods for isofor...

Lorena de la Fuente, Ángeles Arzalluz-Luque, Manuel Tardáguila… in Genome Biology (2020)

Article

Erratum to: A survey of best practices for RNA-seq data analysis

Ana Conesa, Pedro Madrigal, Sonia Tarazona, David Gomez-Cabrero… in Genome Biology (2016)

Article

A survey of best practices for RNA-seq data analysis

RNA-sequencing (RNA-seq) has a wide variety of applications, but no single analysis pipeline can be used in all cases. We review all of the major steps in RNA-seq data analysis, including experimental design, ...

Ana Conesa, Pedro Madrigal, Sonia Tarazona, David Gomez-Cabrero… in Genome Biology (2016)

Article

RNAseq analysis of Aspergillus fumigatus in blood reveals a just wait and see resting stage behavior

Invasive aspergillosis is started after germination of Aspergillus fumigatus conidia that are inhaled by susceptible individuals. Fungal hyphae can grow in the lung through the epithelial tissue and disseminate h...

Henriette Irmer, Sonia Tarazona, Christoph Sasse, Patrick Olbermann… in BMC Genomics (2015)