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  1. No Access

    Chapter and Conference Paper

    MRI Super-Resolution Through Generative Degradation Learning

    Spatial resolution plays a critically important role in MRI for the precise delineation of the imaged tissues. Unfortunately, acquisitions with high spatial resolution require increased imaging time, which inc...

    Yao Sui, Onur Afacan, Ali Gholipour in Medical Image Computing and Computer Assis… (2021)

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    Chapter and Conference Paper

    Learning a Gradient Guidance for Spatially Isotropic MRI Super-Resolution Reconstruction

    In MRI practice, it is inevitable to appropriately balance between image resolution, signal-to-noise ratio (SNR), and scan time. It has been shown that super-resolution reconstruction (SRR) is effective to ach...

    Yao Sui, Onur Afacan, Ali Gholipour in Medical Image Computing and Computer Assis… (2020)

  3. No Access

    Chapter and Conference Paper

    Isotropic MRI Super-Resolution Reconstruction with Multi-scale Gradient Field Prior

    In this work, we proposed a novel image-based MRI super-resolution reconstruction (SRR) approach based on anisotropic acquisition schemes. We achieved superior reconstruction to state-of-the-art work by intro...

    Yao Sui, Onur Afacan, Ali Gholipour in Medical Image Computing and Computer Assis… (2019)

  4. Chapter and Conference Paper

    A Bayes Hilbert Space for Compartment Model Computing in Diffusion MRI

    The single diffusion tensor model for map** the brain white matter microstructure has long been criticized as providing sensitive yet non-specific clinical biomarkers for neurodegenerative diseases because (...

    Aymeric Stamm, Olivier Commowick in Medical Image Computing and Computer Assis… (2018)

  5. Chapter and Conference Paper

    Tract-Specific Group Analysis in Fetal Cohorts Using in utero Diffusion Tensor Imaging

    Diffusion tensor imaging (DTI) based group analysis has helped uncover the impact of white matter injuries in a wide range of studies involving subjects from preterm neonates to adults. The application of thes...

    Shadab Khan, Caitlin K. Rollins in Medical Image Computing and Computer Assis… (2018)

  6. Chapter and Conference Paper

    Identification of Gadolinium Contrast Enhanced Regions in MS Lesions Using Brain Tissue Microstructure Information Obtained from Diffusion and T2 Relaxometry MRI

    A multiple sclerosis (MS) lesion at an early stage undergoes active blood brain barrier (BBB) breakdown. Identifying MS lesions in a patient which are undergoing active BBB breakdown is of critical importance ...

    Sudhanya Chatterjee, Olivier Commowick in Medical Image Computing and Computer Assis… (2018)

  7. No Access

    Chapter and Conference Paper

    Motion-Robust Spatially Constrained Parameter Estimation in Renal Diffusion-Weighted MRI by 3D Motion Tracking and Correction of Sequential Slices

    In this work, we introduce a novel motion-robust spatially constrained parameter estimation (MOSCOPE) technique for kidney diffusion-weighted MRI. The proposed motion compensation technique does not require a ...

    Sila Kurugol, Bahram Marami, Onur Afacan in Molecular Imaging, Reconstruction and Anal… (2017)

  8. No Access

    Chapter and Conference Paper

    Decoupling Axial and Radial Tissue Heterogeneity in Diffusion Compartment Imaging

    Diffusion compartment imaging (DCI) characterizes tissues in vivo by separately modeling the diffusion signal arising from a finite number of large scale microstructural environments in each voxel, also referr...

    Benoit Scherrer, Maxime Taquet in Information Processing in Medical Imaging (2017)

  9. Chapter and Conference Paper

    Comprehensive Maximum Likelihood Estimation of Diffusion Compartment Models Towards Reliable Map** of Brain Microstructure

    Diffusion MRI is a key in-vivo non invasive imaging capability that can probe the microstructure of the brain. However, its limited resolution requires complex voxelwise generative models of the diffusion. Dif...

    Aymeric Stamm, Olivier Commowick in Medical Image Computing and Computer-Assis… (2016)

  10. Chapter and Conference Paper

    Motion-Robust Reconstruction Based on Simultaneous Multi-slice Registration for Diffusion-Weighted MRI of Moving Subjects

    Simultaneous multi-slice (SMS) echo-planar imaging has had a huge impact on the acceleration and routine use of diffusion-weighted MRI (DWI) in neuroimaging studies in particular the human connectome project; ...

    Bahram Marami, Benoit Scherrer, Onur Afacan in Medical Image Computing and Computer-Assis… (2016)

  11. Chapter and Conference Paper

    Motion Compensated Abdominal Diffusion Weighted MRI by Simultaneous Image Registration and Model Estimation (SIR-ME)

    Non-invasive characterization of water molecule’s mobility variations by quantitative analysis of diffusion-weighted MRI (DW-MRI) signal decay in the abdomen has the potential to serve as a biomarker in gastro...

    Sila Kurugol, Moti Freiman, Onur Afacan in Medical Image Computing and Computer-Assis… (2015)

  12. Chapter and Conference Paper

    Analytic Quantification of Bias and Variance of Coil Sensitivity Profile Estimators for Improved Image Reconstruction in MRI

    Magnetic resonance (MR) imaging provides a unique in-vivo capability of visualizing tissue in the human brain non-invasively, which has tremendously improved patient care over the past decades. However, there ...

    Aymeric Stamm, Jolene Singh, Onur Afacan in Medical Image Computing and Computer-Assis… (2015)

  13. No Access

    Chapter and Conference Paper

    Accelerated High Spatial Resolution Diffusion-Weighted Imaging

    Acquisition of a series of anisotropically oversampled acquisitions (so-called anisotropic “snapshots”) and reconstruction in the image space has recently been proposed to increase the spatial resolution in di...

    Benoit Scherrer, Onur Afacan, Maxime Taquet in Information Processing in Medical Imaging (2015)

  14. Chapter and Conference Paper

    A Fully Bayesian Inference Framework for Population Studies of the Brain Microstructure

    Models of the diffusion-weighted signal are of strong interest for population studies of the brain microstructure. These studies are typically conducted by extracting a scalar property from the model and subje...

    Maxime Taquet, Benoît Scherrer in Medical Image Computing and Computer-Assis… (2014)

  15. Chapter and Conference Paper

    Construction of a Deformable Spatiotemporal MRI Atlas of the Fetal Brain: Evaluation of Similarity Metrics and Deformation Models

    The development and identification of best methods in fetal brain MRI analysis is crucial as we expect an outburst of studies on groupwise and longitudinal analysis of early brain development in the upcoming y...

    Ali Gholipour, Catherine Limperopoulos in Medical Image Computing and Computer-Assis… (2014)

  16. No Access

    Chapter and Conference Paper

    Spatially-Constrained Probability Distribution Model of Incoherent Motion (SPIM) in Diffusion Weighted MRI Signals of Crohn’s Disease

    Diffusion Weighted imaging (DWI) of the body provides important information about the physiological and microstructural properties of tissues and has great potential for imaging inflammatory activity and impro...

    Sila Kurugol, Moti Freiman, Onur Afacan in Abdominal Imaging. Computational and Clini… (2014)

  17. Chapter and Conference Paper

    T 2-Relaxometry for Myelin Water Fraction Extraction Using Wald Distribution and Extended Phase Graph

    Quantitative assessment of myelin density in the white matter is an emerging tool for neurodegenerative disease related studies such as multiple sclerosis and Schizophrenia. For the last two decades, T ...

    Alireza Akhondi-Asl, Onur Afacan in Medical Image Computing and Computer-Assis… (2014)

  18. No Access

    Chapter and Conference Paper

    Optimal MAP Parameters Estimation in STAPLE - Learning from Performance Parameters versus Image Similarity Information

    In many medical imaging applications, merging segmentations obtained from multiple reference images (i.e., templates) has become a standard practice for improving the accuracy as well as reliability. Simultane...

    Subrahmanyam Gorthi, Alireza Akhondi-Asl in Machine Learning in Medical Imaging (2014)

  19. No Access

    Chapter and Conference Paper

    Four Neuroimaging Questions that P-Values Cannot Answer (and Bayesian Analysis Can)

    Null Hypothesis Significance Testing (NHST) is used pervasively in neuroimaging studies, despite its known limitations. Recent critiques to these tests have mostly focused on technical issues with multiple com...

    Maxime Taquet, Jurriaan M. Peters in Bayesian and grAphical Models for Biomedic… (2014)

  20. Chapter and Conference Paper

    Estimation of a Multi-fascicle Model from Single B-Value Data with a Population-Informed Prior

    Diffusion tensor imaging cannot represent heterogeneous fascicle orientations in one voxel. Various models propose to overcome this limitation. Among them, multi-fascicle models are of great interest to charac...

    Maxime Taquet, Benoît Scherrer in Medical Image Computing and Computer-Assis… (2013)

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