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  1. Article

    Open Access

    Investigation of two metabolic engineering approaches for (R,R)-2,3-butanediol production from glycerol in Bacillus subtilis

    Flux Balance Analysis (FBA) is a well-known bioinformatics tool for metabolic engineering design. Previously, we have successfully used single-level FBA to design metabolic fluxes in Bacillus subtilis to enhance ...

    Nunthaphan Vikromvarasiri, Shuhei Noda in Journal of Biological Engineering (2023)

  2. Article

    Open Access

    Endocrine secretory granule production is caused by a lack of REST and intragranular secretory content and accelerated by PROX1

    Endocrine secretory granules (ESGs) are morphological characteristics of endocrine/neuroendocrine cells and store peptide hormones/neurotransmitters. ESGs contain prohormones and ESG-related molecules, mainly ...

    Jun Ishii, Hanako Sato-Yazawa, Korehito Kashiwagi in Journal of Molecular Histology (2022)

  3. Article

    Open Access

    Direct 1,3-butadiene biosynthesis in Escherichia coli via a tailored ferulic acid decarboxylase mutant

    The C4 unsaturated compound 1,3-butadiene is an important monomer in synthetic rubber and engineering plastic production. However, microorganisms cannot directly produce 1,3-butadiene when glucose is used as a...

    Yutaro Mori, Shuhei Noda, Tomokazu Shirai, Akihiko Kondo in Nature Communications (2021)

  4. Article

    Open Access

    Plasmacytoid urothelial carcinoma of renal pelvis with positive zinc finger E–box–binding homeobox 1: a case report

    The tumor transformation mechanism of a plasmacytoid urothelial carcinoma remains unexplained. We describe the case of a plasmacytoid urothelial carcinoma of the renal pelvis in which the expression of zinc fi...

    Atsuko Takada-Owada, Yumi Nozawa, Masato Onozaki, Shuhei Noda in Diagnostic Pathology (2020)

  5. Article

    Open Access

    Prognostic impact of a tumor-infiltrating lymphocyte subtype in triple negative cancer of the breast

    Tumor-infiltrating lymphocytes (TILs) have recently been reported as an important factor in the tumor microenvironment and influence the growth and progression of cancer. However, the relationship between immu...

    Tsengelmaa Jamiyan, Hajime Kuroda, Rin Yamaguchi, Yoshimasa Nakazato in Breast Cancer (2020)

  6. Article

    Open Access

    Publisher Correction: Metabolic engineering of Escherichia coli for shikimate pathway derivative production from glucose-xylose co-substrate

    An amendment to this paper has been published and can be accessed via a link at the top of the paper.

    Ryosuke Fujiwara, Shuhei Noda, Tsutomu Tanaka, Akihiko Kondo in Nature Communications (2020)

  7. Article

    Open Access

    Metabolic engineering of Escherichia coli for shikimate pathway derivative production from glucose–xylose co-substrate

    Glucose and xylose are the major components of lignocellulose. Effective utilization of both sugars can improve the efficiency of bioproduction. Here, we report a method termed parallel metabolic pathway engin...

    Ryosuke Fujiwara, Shuhei Noda, Tsutomu Tanaka, Akihiko Kondo in Nature Communications (2020)

  8. Article

    Open Access

    Reconstruction of metabolic pathway for isobutanol production in Escherichia coli

    The microbial production of useful fuels and chemicals has been widely studied. In several cases, glucose is used as the raw material, and almost all microbes adopt the Embden–Meyerhof (EM) pathway to degrade ...

    Shuhei Noda, Yutaro Mori, Sachiko Oyama, Akihiko Kondo in Microbial Cell Factories (2019)

  9. Article

    Open Access

    Engineering a synthetic pathway for maleate in Escherichia coli

    Maleate is one of the most important dicarboxylic acids and is used to produce various polymer compounds and pharmaceuticals. Herein, microbial production of maleate is successfully achieved, to our knowledge ...

    Shuhei Noda, Tomokazu Shirai, Yutaro Mori, Sachiko Oyama in Nature Communications (2017)

  10. No Access

    Article

    4-Vinylphenol production from glucose using recombinant Streptomyces mobaraense expressing a tyrosine ammonia lyase from Rhodobacter sphaeroides

    To find a novel host for the production of 4-vinylphenol (4VPh) by screening Streptomyces species.

    Ryosuke Fujiwara, Shuhei Noda, Yoshifumi Kawai, Tsutomu Tanaka in Biotechnology Letters (2016)

  11. Article

    Open Access

    Secretory production of tetrameric native full-length streptavidin with thermostability using Streptomyces lividans as a host

    Streptavidin is a tetrameric protein derived from Streptomyces avidinii, and has tight and specific biotin binding affinity. Applications of the streptavidin-biotin system have been widely studied. Streptavidin i...

    Shuhei Noda, Takuya Matsumoto, Tsutomu Tanaka, Akihiko Kondo in Microbial Cell Factories (2015)

  12. Article

    Open Access

    Hyper secretion of Thermobifida fusca β-glucosidase via a Tat-dependent signal peptide using Streptomyces lividans

    Protein production as secretory-form is a powerful tool in industrial enzyme production due to the simple purification procedure. Streptomyces lividans is a versatile host for secretory production of useful prote...

    Takaya Miyazaki, Shuhei Noda, Tsutomu Tanaka, Akihiko Kondo in Microbial Cell Factories (2013)

  13. No Access

    Article

    Creation of endoglucanase-secreting Streptomyces lividans for enzyme production using cellulose as the carbon source

    We screened for high-activity endoglucanase (EG) as a first step toward the creation of cellulose-assimilating Streptomyces lividans transformants. EGs derived from Thermobifida fusca YX, Tfu0901, and S. lividans

    Shuhei Noda, Yoshifumi Kawai, Takaya Miyazaki in Applied Microbiology and Biotechnology (2013)

  14. Article

    Open Access

    p-Hydroxycinnamic acid production directly from cellulose using endoglucanase- and tyrosine ammonia lyase-expressing Streptomyces lividans

    p-Hydroxycinnamic acid (pHCA) is an aromatic compound that serves as a starting material for the production of many commercially valuable chemicals, such as fragrances and pharmaceuticals, and is also used in t.....

    Yoshifumi Kawai, Shuhei Noda, Chiaki Ogino, Yasunobu Takeshima in Microbial Cell Factories (2013)

  15. Article

    Open Access

    Benzoic acid fermentation from starch and cellulose via a plant-like β-oxidation pathway in Streptomyces maritimus

    Benzoic acid is one of the most useful aromatic compounds. Despite its versatility and simple structure, benzoic acid production using microbes has not been reported previously. Streptomyces are aerobic, Gram-pos...

    Shuhei Noda, Eiichi Kitazono, Tsutomu Tanaka, Chiaki Ogino in Microbial Cell Factories (2012)

  16. No Access

    Article

    Cinnamic acid production using Streptomyces lividans expressing phenylalanine ammonia lyase

    Cinnamic acid production was demonstrated using Streptomyces as a host. A gene encoding phenylalanine ammonia lyase (PAL) from Streptomyces maritimus was introduced into Streptomyces lividans, and its expression ...

    Shuhei Noda, Takaya Miyazaki in Journal of Industrial Microbiology & Biote… (2011)

  17. No Access

    Article

    Analysis of non-genetic risk factors for adverse skin reactions to radiotherapy among 284 Breast Cancer patients

    We analyzed non-genetic risk factors for adverse skin reactions to irradiation at 4 collaborating Japanese institutions, to design future investigation into genetic risk factors for adverse skin reactions to i...

    Mayumi Iwakawa, Shuhei Noda, Shigeru Yamada, Naohito Yamamoto in Breast Cancer (2006)

  18. No Access

    Article

    Keap1-null mutation leads to postnatal lethality due to constitutive Nrf2 activation

    Transcription factor Nrf2 (encoded by Nfe2l2) regulates a battery of detoxifying and antioxidant genes, and Keap1 represses Nrf2 function. When we ablated Keap1, Keap1-deficient mice died postnatally, probably fr...

    Nobunao Wakabayashi, Ken Itoh, Junko Wakabayashi, Hozumi Motohashi in Nature Genetics (2003)