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  1. Article

    Open Access

    Recovering true FRET efficiencies from smFRET investigations requires triplet state mitigation

    Single-molecule fluorescence resonance energy transfer (smFRET) methods employed to quantify time-dependent compositional and conformational changes within biomolecules require elevated illumination intensitie...

    Avik K. Pati, Zeliha Kilic, Maxwell I. Martin, Daniel S. Terry in Nature Methods (2024)

  2. Article

    Open Access

    Geometric alignment of aminoacyl-tRNA relative to catalytic centers of the ribosome underpins accurate mRNA decoding

    Accurate protein synthesis is determined by the two-subunit ribosome’s capacity to selectively incorporate cognate aminoacyl-tRNA for each mRNA codon. The molecular basis of tRNA selection accuracy, and how fi...

    Dylan Girodat, Hans-Joachim Wieden, Scott C. Blanchard in Nature Communications (2023)

  3. Article

    Open Access

    Author Correction: CFTR function, pathology and pharmacology at single-molecule resolution

    Jesper Levring, Daniel S. Terry, Zeliha Kilic, Gabriel Fitzgerald in Nature (2023)

  4. Article

    Open Access

    mRNA decoding in human is kinetically and structurally distinct from bacteria

    In all species, ribosomes synthesize proteins by faithfully decoding messenger RNA (mRNA) nucleotide sequences using aminoacyl-tRNA substrates. Current knowledge of the decoding mechanism derives principally f...

    Mikael Holm, S. Kundhavai Natchiar, Emily J. Rundlet, Alexander G. Myasnikov in Nature (2023)

  5. Article

    Open Access

    CFTR function, pathology and pharmacology at single-molecule resolution

    The cystic fibrosis transmembrane conductance regulator (CFTR) is an anion channel that regulates salt and fluid homeostasis across epithelial membranes1. Alterations in CFTR cause cystic fibrosis, a fatal diseas...

    Jesper Levring, Daniel S. Terry, Zeliha Kilic, Gabriel Fitzgerald in Nature (2023)

  6. Article

    Synthesis and single-molecule imaging reveal stereospecific enhancement of binding kinetics by the antitumour eEF1A antagonist SR-A3

    Ternatin-family cyclic peptides inhibit protein synthesis by targeting the eukaryotic elongation factor-1α. A potentially related cytotoxic natural product (‘A3’) was isolated from Aspergillus, but only 4 of its ...

    Hao-Yuan Wang, Haojun Yang, Mikael Holm, Harrison Tom, Keely Oltion in Nature Chemistry (2022)

  7. Article

    Open Access

    The chemotherapeutic CX-5461 primarily targets TOP2B and exhibits selective activity in high-risk neuroblastoma

    Survival in high-risk pediatric neuroblastoma has remained around 50% for the last 20 years, with immunotherapies and targeted therapies having had minimal impact. Here, we identify the small molecule CX-5461 ...

    Min Pan, William C. Wright, Richard H. Chapple, Asif Zubair in Nature Communications (2021)

  8. Article

    Open Access

    Structural basis of early translocation events on the ribosome

    Peptide-chain elongation during protein synthesis entails sequential aminoacyl-tRNA selection and translocation reactions that proceed rapidly (2–20 per second) and with a low error rate (around 10−3 to 10−5 at e...

    Emily J. Rundlet, Mikael Holm, Magdalena Schacherl, S. Kundhavai Natchiar in Nature (2021)

  9. No Access

    Article

    Single-molecule FRET imaging of GPCR dimers in living cells

    Class C G protein-coupled receptors (GPCRs) are known to form stable homodimers or heterodimers critical for function, but the oligomeric status of class A and B receptors, which constitute >90% of all GPCRs, ...

    Wesley B. Asher, Peter Geggier, Michael D. Holsey, Grant T. Gilmore in Nature Methods (2021)

  10. No Access

    Article

    Subnanometer structures of HIV-1 envelope trimers on aldrithiol-2-inactivated virus particles

    The HIV-1 envelope glycoprotein (Env) trimer, composed of gp120 and gp41 subunits, mediates viral entry into cells. Recombinant Env trimers have been studied structurally, but characterization of Env embedded ...

    Ze Li, Wenwei Li, Maolin Lu, Julian Bess Jr in Nature Structural & Molecular Biology (2020)

  11. Article

    Author Correction: Quantifying secondary transport at single-molecule resolution

    An Amendment to this paper has been published and can be accessed via a link at the top of the paper.

    Gabriel A. Fitzgerald, Daniel S. Terry, Audrey L. Warren, Matthias Quick in Nature (2020)

  12. Article

    Open Access

    X-ray structure of LeuT in an inward-facing occluded conformation reveals mechanism of substrate release

    Neurotransmitter:sodium symporters (NSS) are conserved from bacteria to man and serve as targets for drugs, including antidepressants and psychostimulants. Here we report the X-ray structure of the prokaryotic...

    Kamil Gotfryd, Thomas Boesen, Jonas S. Mortensen in Nature Communications (2020)

  13. Article

    Open Access

    Disruption of the HIV-1 Envelope allosteric network blocks CD4-induced rearrangements

    The trimeric HIV-1 Envelope protein (Env) mediates viral-host cell fusion via a network of conformational transitions, with allosteric elements in each protomer orchestrating host receptor-induced exposure of ...

    Rory Henderson, Maolin Lu, Ye Zhou, Zekun Mu, Robert Parks in Nature Communications (2020)

  14. No Access

    Article

    Cargo adaptors regulate step** and force generation of mammalian dynein–dynactin

    Cytoplasmic dynein is an ATP-driven motor that transports intracellular cargos along microtubules. Dynein adopts an inactive conformation when not attached to a cargo, and motility is activated when dynein ass...

    Mohamed M. Elshenawy, John T. Canty, Liya Oster, Luke S. Ferro in Nature Chemical Biology (2019)

  15. No Access

    Article

    Quantifying secondary transport at single-molecule resolution

    Secondary active transporters, which are vital for a multitude of physiological processes, use the energy of electrochemical ion gradients to power substrate transport across cell membranes1,2. Efforts to investi...

    Gabriel A. Fitzgerald, Daniel S. Terry, Audrey L. Warren, Matthias Quick in Nature (2019)

  16. Article

    Open Access

    Correction to: Implications of sequence variation on the evolution of rRNA

    The article Implications of sequence variation on the evolution of rRNA, written by Matthew M. Parks, Chad M. Kurylo, Jake E. Batchelder, C. Theresa Vincent and Scott C. Blanchard, was originally published ele...

    Matthew M. Parks, Chad M. Kurylo, Jake E. Batchelder in Chromosome Research (2019)

  17. Article

    Open Access

    Ribosome biogenesis during cell cycle arrest fuels EMT in development and disease

    Ribosome biogenesis is a canonical hallmark of cell growth and proliferation. Here we show that execution of Epithelial-to-Mesenchymal Transition (EMT), a migratory cellular program associated with development...

    Varsha Prakash, Brittany B. Carson, Jennifer M. Feenstra in Nature Communications (2019)

  18. No Access

    Article

    ADAM10 controls the differentiation of the coronary arterial endothelium

    The coronary vasculature is crucial for normal heart function, yet much remains to be learned about its development, especially the maturation of coronary arterial endothelium. Here, we show that endothelial i...

    Gregory Farber, Matthew M. Parks, Nicole Lustgarten Guahmich, Yi Zhang in Angiogenesis (2019)

  19. No Access

    Article

    Associating HIV-1 envelope glycoprotein structures with states on the virus observed by smFRET

    The HIV-1 envelope glycoprotein (Env) trimer mediates cell entry and is conformationally dynamic18. Imaging by single-molecule fluorescence resonance energy transfer (smFRET) has revealed that, on the surface of...

    Maolin Lu, **aochu Ma, Luis R. Castillo-Menendez, Jason Gorman, Nirmin Alsahafi in Nature (2019)

  20. Article

    Open Access

    Implications of sequence variation on the evolution of rRNA

    The evolution of the multi-copy family of ribosomal RNA (rRNA) genes is unique in regard to its genetics and genome evolution. Paradoxically, rRNA genes are highly homogenized within and between individuals, y...

    Matthew M. Parks, Chad M. Kurylo, Jake E. Batchelder in Chromosome Research (2019)

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