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  1. No Access

    Article

    Fine map** of a grain weight quantitative trait locus on rice chromosome 8 using near-isogenic lines derived from a cross between Oryza sativa and Oryza rufipogon

    A quantitative trait locus (QTL) for grain weight (GW) was detected near SSR marker RM210 on chromosome 8 in backcross populations derived from a cross between the Korean japonica cultivar Hwaseongbyeo and Oryza ...

    **aobo **e, Mi-Hee Song, Fengxue **, Sang-Nag Ahn… in Theoretical and Applied Genetics (2006)

  2. No Access

    Article

    Sources and predictors of resolvable indel polymorphism assessed using rice as a model

    The principal sources of genetic variation that can be assayed with restriction enzymes are base substitutions and insertions/deletions (indels). The likelihood of detecting indels as restriction fragment leng...

    J. D. Edwards, V. M. Lee, S. R. McCouch in Molecular Genetics and Genomics (2004)

  3. No Access

    Article

    Identification of quantitative trait loci for grain quality in an advanced backcross population derived from the Oryza sativa variety IR64 and the wild relative O. rufipogon

    The objective of this study was to identify quantitative trait loci (QTLs) associated with grain quality in rice. Two hundred eighty-five BC2F2 families developed from an interspecific cross between cv IR64 and O...

    E. M. Septiningsih, K. R. Trijatmiko, S. Moeljopawiro… in Theoretical and Applied Genetics (2003)

  4. No Access

    Article

    Identification of quantitative trait loci for yield and yield components in an advanced backcross population derived from the Oryza sativa variety IR64 and the wild relative O. rufipogon

    A BC2F2 population developed from an interspecific cross between Oryza sativa (cv IR64) and O. rufipogon (IRGC 105491) was used in an advanced backcross QTL analysis to identify and introduce agronomically useful...

    E. M. Septiningsih, J. Prasetiyono, E. Lubis, T. H. Tai… in Theoretical and Applied Genetics (2003)

  5. No Access

    Article

    Map** quantitative trait loci for yield, yield components and morphological traits in an advanced backcross population between Oryza rufipogon and the Oryza sativa cultivar Jefferson

    An advanced backcross population between an accession of Oryza rufipogon (IRGC 105491) and the U.S. cultivar Jefferson (Oryza sativa ssp. japonica) was developed to identify quantitative trait loci (QTLs) for yi...

    M. J. Thomson, T. H. Tai, A. M. McClung, X-H. Lai… in Theoretical and Applied Genetics (2003)

  6. No Access

    Chapter

    Rice molecular map

    Rice is ideally suited to genetic and molecular studies. Some of its positive features include a small nuclear genome (450 Mb), diploidy (2n = 2x = 24) and the ability to be transformed by exogenous DNA (Uchim...

    S. R. McCouch in DNA-Based Markers in Plants (2001)

  7. No Access

    Article

    Quantitative trait loci for yield and yield components in an Oryza sativa×Oryza rufipogon BC2F2 population evaluated in an upland environment

    An advanced backcross breeding strategy was used to identify quantitative trait loci (QTLs) associated with eight agronomic traits in a BC2F2 population derived from an interspecific cross between Caiapo, an upla...

    P. Moncada, C. P. Martínez, J. Borrero, M. Chatel… in Theoretical and Applied Genetics (2001)

  8. No Access

    Article

    Microsatellites and microsynteny in the chloroplast genomes of Oryza and eight other Gramineae species

    Primer pairs flanking ten chloroplast microsatellite loci, originally identified in Oryza sativa cv Nipponbare, were evaluated for amplification and allelic diversity using a panel of 13 ...

    T. Ishii, S. R. McCouch in Theoretical and Applied Genetics (2000)

  9. No Access

    Article

    Map** quantitative trait loci associated with days to flowering and photoperiod sensitivity in rice (Oryza sativa L.)

    This study was undertaken to identify putative quantitative trait loci (QTLs) associated with days to flowering (DTF) and photoperiod response in rice. A population of 143 recombinant inbred lines derived from...

    M. Maheswaran, Ning Huang, S.R. Sreerangasamy, S.R. McCouch in Molecular Breeding (2000)

  10. No Access

    Article

    Map** and genome organization of microsatellite sequences in rice (Oryza sativa L.)

    In order to enhance the resolution of an existing genetic map of rice, and to obtain a comprehensive picture of marker utility and genomic distribution of microsatellites in this important grain species, rice ...

    S. Temnykh, William D. Park, Nicola Ayres… in Theoretical and Applied Genetics (2000)

  11. No Access

    Article

    Diversity of microsatellites derived from genomic libraries and GenBank sequences in rice (Oryza sativa L.)

    The growing number of rice microsatellite markers warrants a comprehensive comparison of allelic variability between the markers developed using different methods, with various sequence repeat motifs, and from...

    Y. G. Cho, T. Ishii, S. Temnykh, X. Chen, L. Lipovich… in Theoretical and Applied Genetics (2000)

  12. No Access

    Article

    Molecular characterization of pdc2 and map** of three pdc genes from rice

     The anaerobic fermentation pathway is thought to play an important role under flooding conditions. The pyruvate decarboxylase 2 (pdc2) gene that encodes the first enzyme of this pathway has been cloned and chara...

    E. Huq, S. Harrington, M. A. Hossain, F. Wen… in Theoretical and Applied Genetics (1999)

  13. No Access

    Article

    Inter-simple sequence repeat (ISSR) amplification for analysis of microsatellite motif frequency and fingerprinting in rice (Oryza sativa L.)

     Inter-simple sequence repeat (ISSR) amplification was used to analyze microsatellite motif frequency in the rice genome and to evaluate genetic diversity among rice cultivars. A total of 32 primers, containin...

    M. W. Blair, O. Panaud, S. R. McCouch in Theoretical and Applied Genetics (1999)

  14. No Access

    Article

    Molecular map** of a new genic male-sterility gene causing chalky endosperm in rice ( Oryza sativa L.)

    A genic male-sterility gene newly induced by chemical mutagenesis, tentatively designated as ms-h(t), was located on the molecular map of rice and tested for its effect on chalky endosperm. Bulked segregant an...

    H.J. Koh, Y.H. Son, M.H. Heu, H.S. Lee, S.R. McCouch in Euphytica (1999)

  15. No Access

    Article

    Integrated map of AFLP, SSLP and RFLP markers using a recombinant inbred population of rice (Oryza sativa L.)

     A molecular map of rice consisting of 231 amplified fragment length polymorphisms (AFLPs), 212 restriction fragment length polymorphisms (RFLPs), 86 simple-sequence length polymorphisms (SSLPs), five isozyme ...

    Y. G. Cho, S. R. McCouch, M. Kuiper, M.-R. Kang, J. Pot… in Theoretical and Applied Genetics (1998)

  16. No Access

    Article

    Anchor probes for comparative map** of grass genera

     Comparative map** of cDNA clones provides an important foundation for examining structural conservation among the chromosomes of diverse genera and for establishing hypotheses about the relationship between...

    A. E. Van Deynze, M. E. Sorrells, W. D. Park… in Theoretical and Applied Genetics (1998)

  17. No Access

    Article

    Development of a microsatellite framework map providing genome-wide coverage in rice (Oryza sativa L.)

     Ninety-four newly developed microsatellite markers were integrated into existing RFLP framework maps of four rice populations, including two doubled haploid, a recombinant inbred, and an interspecific backcro...

    X. Chen, S. Temnykh, Y. Xu, Y. G. Cho, S. R. McCouch in Theoretical and Applied Genetics (1997)

  18. No Access

    Article

    Microsatellite and sequence-tagged site markers diagnostic for the rice bacterial leaf blight resistance gene xa-5

     Microsatellite and sequence-tagged site (STS) markers tightly linked to the bacterial leaf blight (BLB) resistance gene xa-5 were identified in this study. A survey was conducted to find molecular markers that d...

    M. W. Blair, S. R. McCouch in Theoretical and Applied Genetics (1997)

  19. No Access

    Article

    Linkage map** of starch branching enzyme III in rice (Oryza sativa L.) and prediction of location of orthologous genes in other grasses

     The chromosomal position of Starch Branching Enzyme III (SBEIII) was determined via linkage to RFLP markers on an existing molecular map of rice (Oryza sativa L.). A cDNA of 890 bp was generated using specific P...

    S. E. Harrington, H. F. J. Bligh, W. D. Park… in Theoretical and Applied Genetics (1997)

  20. No Access

    Article

    Chromosomal regions associated with segregation distortion of molecular markers in F2 , backcross, doubled haploid, and recombinant inbred populations in rice (Oryza sativa L.)

    Chromosomal regions associated with marker segregation distortion in rice were compared based on six molecular linkage maps. Map** populations were derived from one interspecific backcross and five intersub...

    Y. Xu, L. Zhu, J. **ao, N. Huang, S. R. McCouch in Molecular and General Genetics MGG (1997)

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