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  1. Article

    Open Access

    LDexpress: an online tool for integrating population-specific linkage disequilibrium patterns with tissue-specific expression data

    Genome-wide association studies have identified thousands of genetic susceptibility loci associated with cancer as well as other traits and diseases. Map** germline variation in identified genetic susceptibi...

    Shu-Hong Lin, Rohit Thakur, Mitchell J. Machiela in BMC Bioinformatics (2021)

  2. Article

    Open Access

    A large Canadian cohort provides insights into the genetic architecture of human hair colour

    Hair colour is a polygenic phenotype that results from differences in the amount and ratio of melanins located in the hair bulb. Genome-wide association studies (GWAS) have identified many loci involved in the...

    Frida Lona-Durazo, Marla Mendes, Rohit Thakur, Karen Funderburk in Communications Biology (2021)

  3. Article

    Open Access

    Resolution of tissue signatures of therapy response in patients with recurrent GBM treated with neoadjuvant anti-PD1

    The response of patients with recurrent glioblastoma multiforme to neoadjuvant immune checkpoint blockade has been challenging to interpret due to the inter-patient and intra-tumor heterogeneity. We report on ...

    Yue Lu, Alphonsus H. C. Ng, Frances E. Chow, Richard G. Everson in Nature Communications (2021)

  4. Article

    Open Access

    Tumor-infiltrating mast cells are associated with resistance to anti-PD-1 therapy

    Anti-PD-1 therapy is used as a front-line treatment for many cancers, but mechanistic insight into this therapy resistance is still lacking. Here we generate a humanized (Hu)-mouse melanoma model by injecting ...

    Rajasekharan Somasundaram, Thomas Connelly, Robin Choi in Nature Communications (2021)

  5. No Access

    Chapter and Conference Paper

    Optimization of Process Parameters in Micro-EDM Through Mixed Flushing and GRA Technique

    Diesinker electric discharge machining is a widely used non-traditional technique to make highly precise and complex geometry parts. In this paper, the effects of material density of electrode (copper, alumini...

    Saurabh Bhardwaj, Rohit Thakur in Recent Advances in Smart Manufacturing and… (2021)

  6. Article

    Open Access

    Stroma remodeling and reduced cell division define durable response to PD-1 blockade in melanoma

    Although immune checkpoint inhibitors (ICIs) have achieved unprecedented results in melanoma, the biological features of the durable responses initiated by these drugs remain unknown. Here we show the genetic ...

    Elena Galvani, Piyushkumar A. Mundra, Sara Valpione in Nature Communications (2020)

  7. No Access

    Article

    B cells and tertiary lymphoid structures promote immunotherapy response

    Treatment with immune checkpoint blockade (ICB) has revolutionized cancer therapy. Until now, predictive biomarkers110 and strategies to augment clinical response have largely focused on the T cell compartment. ...

    Beth A. Helmink, Sangeetha M. Reddy, Jianjun Gao, Shaojun Zhang, Rafet Basar in Nature (2020)