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  1. Chapter and Conference Paper

    Correction to: Simulating Spiking Neural Networks Based on SW26010pro

    Zhichao Wang, Xuelei Li, **tao Meng, Yi Pan in Bioinformatics Research and Applications (2022)

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    Chapter and Conference Paper

    Prediction of Drug-Disease Relationship on Heterogeneous Networks Based on Graph Convolution

    Drug-disease association prediction is essential in drug development and repositioning. At present, the proposed drug-disease association prediction models based on graph convolution usually learn the characte...

    Jiancheng Zhong, Pan Cui, Zuohang Qu in Bioinformatics Research and Applications (2022)

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    Chapter and Conference Paper

    Simulating Spiking Neural Networks Based on SW26010pro

    The spiking neural network (SNN) simulators play a significant role in modeling neural systems and the study of brain function. Currently, many simulators using CPU or GPU have been developed. However, these s...

    Zhichao Wang, Xuelei Li, **tao Meng, Yi Pan in Bioinformatics Research and Applications (2022)

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    Chapter and Conference Paper

    Diabetic Retinopathy Grading Base on Contrastive Learning and Semi-supervised Learning

    The diabetic retinopathy (DR) detection based on deep learning is a powerful tool for early screening of DR. Although several automatic DR grading algorithms have been proposed, their performance is still limi...

    Yunchao Gu, **nliang Wang, Junjun Pan in Bioinformatics Research and Applications (2021)

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    Chapter and Conference Paper

    An Efficient Greedy Incremental Sequence Clustering Algorithm

    Gene sequence clustering is very basic and important in computational biology and bioinformatics for the study of phylogenetic relationships and gene function prediction, etc. With the rapid growth of the amou...

    Zhen Ju, Huiling Zhang, **gtao Meng in Bioinformatics Research and Applications (2021)

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    Chapter and Conference Paper

    Predicting Microbe-Disease Association via Tripartite Network and Relation Graph Convolutional Network

    Many evidences show that microbes play vital roles in human health and diseases. Thus, predicting microbe-disease associations is helpful for disease prevention. In this study, we propose a predictive model ca...

    Yueyue Wang, **ujuan Lei, Yi Pan in Bioinformatics Research and Applications (2021)

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    Chapter and Conference Paper

    Predicting Drug Drug Interactions by Signed Graph Filtering-Based Convolutional Networks

    Drug drug interactions (DDIs) are crucial for drug research and pharmacologia. Recently, graph neural networks (GNNs) have handled these interactions successfully and shown great predictive performance, but mo...

    Ming Chen, Yi Pan, Chunyan Ji in Bioinformatics Research and Applications (2021)

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    Chapter and Conference Paper

    High-Performance Systems for in Silico Microscopy Imaging Studies

    High-resolution medical images from advanced instruments provide rich information about morphological and functional characteristics of biological systems. However, most of the information available in biomedi...

    Fusheng Wang, Tahsin Kurc, Patrick Widener in Data Integration in the Life Sciences (2010)

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    Chapter and Conference Paper

    COE: A General Approach for Efficient Genome-Wide Two-Locus Epistasis Test in Disease Association Study

    The availability of high density single nucleotide polymorphisms (SNPs) data has made genome-wide association study computationally challenging. Two-locus epistasis (gene-gene interaction) detection has attrac...

    **ang Zhang, Feng Pan, Yuying **e, Fei Zou in Research in Computational Molecular Biology (2009)

  10. Chapter and Conference Paper

    Using Multi-scale Glide Zoom Window Feature Extraction Approach to Predict Protein Homo-oligomer Types

    The concept of multi-scale glide zoom window was proposed and a novel approach of multi-scale glide zoom window feature extraction was used for predicting protein homo-oligomers. Based on the concept of multi-...

    QiPeng Li, Shao Wu Zhang, Quan Pan in Pattern Recognition in Bioinformatics (2008)

  11. Chapter and Conference Paper

    Using Decision Templates to Predict Subcellular Localization of Protein

    Theoretical and computational methods for the prediction of protein subcellular localization have been proposed and are develo** continuously. Many representations of protein sequence are proposed but a new ...

    Jianyu Shi, Shaowu Zhang, Quan Pan, Yanning Zhang in Pattern Recognition in Bioinformatics (2007)

  12. Chapter and Conference Paper

    Prediction of Protein Subcellular Localizations Using Moment Descriptors and Support Vector Machine

    As more and more genomes have been discovered in recent years, it is an urgent need to develop a reliable method to predict protein subcellular localization for further function exploration. However many well-...

    Jianyu Shi, Shaowu Zhang, Yan Liang, Quan Pan in Pattern Recognition in Bioinformatics (2006)