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  1. Article

    Open Access

    Identification of different myofiber types in pigs muscles and construction of regulatory networks

    Skeletal muscle is composed of muscle fibers with different physiological characteristics, which plays an important role in regulating skeletal muscle metabolism, movement and body homeostasis. The type of ske...

    Chenchen Li, Yinuo Wang, **aohui Sun, **** Yang, Yingchun Ren, **rui Jia in BMC Genomics (2024)

  2. Article

    Open Access

    Integrated analysis of the ubiquitination mechanism reveals the specific signatures of tissue and cancer

    Ubiquitination controls almost all cellular processes. The dysregulation of ubiquitination signals is closely associated with the initiation and progression of multiple diseases. However, there is little compr...

    Deyu Long, Ruiqi Zhang, Changjian Du, Jiapei Tong, Yu Ni, Yaqi Zhou in BMC Genomics (2023)

  3. Article

    Retraction Note: Intelligent business and marketing model under full platform multimedia soft computing framework

    Mingzhi Liao, Jie Chen in Multimedia Tools and Applications (2023)

  4. No Access

    Article

    EPI-Mind: Identifying Enhancer–Promoter Interactions Based on Transformer Mechanism

    Enhancer–Promoter Interactions (EPIs) is an essential step in the gene regulation process. However, the detection of EPIs by traditional wet experimental techniques is time-consuming and expensive. Thus, compu...

    Yu Ni, Linqi Fan, Miao Wang, Ning Zhang in Interdisciplinary Sciences: Computational … (2022)

  5. Article

    Open Access

    Profiling of miRNAs in porcine Sertoli cells

    Sertoli cells (SCs) create a specialized environment to support and dictate spermatogenesis. MicroRNAs (miRNAs), a kind of ~ 22 nt small noncoding RNAs, have been reported to be highly abundant in mouse SCs an...

    **aoxu Chen, Yi Zheng, Xueliang Li in Journal of Animal Science and Biotechnology (2020)

  6. Article

    Open Access

    CellSim: a novel software to calculate cell similarity and identify their co-regulation networks

    Cell direct reprogramming technology has been rapidly developed with its low risk of tumor risk and avoidance of ethical issues caused by stem cells, but it is still limited to specific cell types. Direct repr...

    Leijie Li, Dongxue Che, **aodan Wang, Peng Zhang, Siddiq Ur Rahman in BMC Bioinformatics (2019)

  7. No Access

    Article

    RETRACTED ARTICLE: Intelligent business and marketing model under full platform multimedia soft computing framework

    Data warehouse technology-oriented financial information system solutions the system design and traditional management information system design should use engineering design ideas as a guide. This trend inspi...

    Mingzhi Liao, Jie Chen in Multimedia Tools and Applications (2019)

  8. Article

    Open Access

    The oncogene Etv5 promotes MET in somatic reprogramming and orchestrates epiblast/primitive endoderm specification during mESCs differentiation

    Unipotent spermatogonial stem cells (SSCs) can be efficiently reprogrammed into pluripotent stem cells only by manipulating the culture condition, without introducing exogenous reprogramming factors. This phen...

    **glong Zhang, Hongxia Cao, **g **e, Chen Fan, Youlong **e in Cell Death & Disease (2018)

  9. No Access

    Article

    Alzheimer’s Disease Variants with the Genome-Wide Significance are Significantly Enriched in Immune Pathways and Active in Immune Cells

    The existing large-scale genome-wide association studies (GWAS) datasets provide strong support for investigating the mechanisms of Alzheimer’s disease (AD) by applying multiple methods of pathway analysis. Pr...

    Qinghua Jiang, Shuilin **, Yongshuai Jiang, Mingzhi Liao in Molecular Neurobiology (2017)

  10. Article

    Open Access

    Association of single nucleotide polymorphism rs3803662 with the risk of breast cancer

    Large scale association studies have identified the single nucleotide polymorphism rs3803662 associated with breast cancer risk. However, the sample size of most studies is too small. Here, we performed this m...

    Yuan Yang, Wen**g Wang, Guiyou Liu, Yingcui Yu, Mingzhi Liao in Scientific Reports (2016)

  11. No Access

    Article

    CLU rs9331888 Polymorphism Contributes to Alzheimer’s Disease Susceptibility in Caucasian But Not East Asian Populations

    Large-scale genome-wide association studies (GWAS) identified three single nucleotide polymorphisms rs11136000, rs2279590, and rs9331888 in CLU gene to be significantly associated with Alzheimer’s disease (AD)...

    Shuyan Zhang, Xuling Li, Guoda Ma, Yongshuai Jiang, Mingzhi Liao in Molecular Neurobiology (2016)

  12. No Access

    Article

    Identifying the Association Between Alzheimer’s Disease and Parkinson’s Disease Using Genome-Wide Association Studies and Protein-Protein Interaction Network

    Alzheimer’s disease (AD) and Parkinson’s disease (PD) are the first and second most common neurodegenerative diseases in the elderly. Shared clinical and pathological features have been reported. Recent large-...

    Guiyou Liu, **njie Bao, Yongshuai Jiang, Mingzhi Liao in Molecular Neurobiology (2015)

  13. No Access

    Article

    Analyzing 54,936 Samples Supports the Association Between CD2AP rs9349407 Polymorphism and Alzheimer’s Disease Susceptibility

    The CD2-associated protein (CD2AP) rs9349407 polymorphism was first identified to be significantly associated with Alzheimer’s disease (AD) in European ancestry by genome-wide association studies (GWAS). Howev...

    Hongyuan Chen, Guihua Wu, Yongshuai Jiang, Rennan Feng in Molecular Neurobiology (2015)

  14. No Access

    Article

    CD33 rs3865444 Polymorphism Contributes to Alzheimer’s Disease Susceptibility in Chinese, European, and North American Populations

    The CD33 rs3865444 polymorphism was first identified to be associated with Alzheimer’s disease (AD) in European population. However, the following studies reported weak or no significant association in Chinese...

    **ngwang Li, Ning Shen, Shuyan Zhang, Jiafeng Liu, Qinghua Jiang in Molecular Neurobiology (2015)

  15. No Access

    Article

    Integrating Genome-Wide Association Study and Brain Expression Data Highlights Cell Adhesion Molecules and Purine Metabolism in Alzheimer’s Disease

    Alzheimer’s disease (AD) is the most common neurodegenerative disease in the elderly. Recently, genome-wide association studies (GWAS) have been used to investigate AD pathogenesis. However, a large proportion...

    Zimin **ang, Meiling Xu, Mingzhi Liao, Yongshuai Jiang in Molecular Neurobiology (2015)

  16. No Access

    Article

    An Updated Analysis with 85,939 Samples Confirms the Association Between CR1 rs6656401 Polymorphism and Alzheimer’s Disease

    The complement receptor 1 (CR1) rs6656401 polymorphism was first identified to be associated with Alzheimer’s disease (AD) in European ancestry. However, the following studies reported weak or no significant a...

    Ning Shen, Bin Chen, Yongshuai Jiang, Rennan Feng, Mingzhi Liao in Molecular Neurobiology (2015)

  17. No Access

    Article

    Pathway analysis of genome-wide association study and transcriptome data highlights new biological pathways in colorectal cancer

    Colorectal cancer (CRC) is a common malignancy that meets the definition of a complex disease. Genome-wide association study (GWAS) has identified several loci of weak predictive value in CRC, however, these d...

    Baoku Quan, **ngsi Qi, Zhihui Yu, Yongshuai Jiang in Molecular Genetics and Genomics (2015)

  18. No Access

    Article

    CLU rs2279590 polymorphism contributes to Alzheimer’s disease susceptibility in Caucasian and Asian populations

    It is reported that CLU rs2279590 polymorphism is significantly associated with Alzheimer’s disease (AD) in European ancestry. Recent studies investigated rs2279590 polymorphism in Asian population (Chinese, J...

    Shuyan Zhang, Donghui Zhang, Yongshuai Jiang, Lina Wu in Journal of Neural Transmission (2015)

  19. Article

    Open Access

    Analyzing large-scale samples confirms the association between rs16892766 polymorphism and colorectal cancer susceptibility

    Colorectal cancer (CRC) is a common complex disease caused by the combination of genetic variants and environmental factors. Genome-wide association studies (GWAS) have been performed and reported some novel C...

    Mingzhi Liao, Guangyu Wang, Baoku Quan, **ngsi Qi, Zhihui Yu in Scientific Reports (2015)

  20. No Access

    Article

    Analyzing Large-Scale Samples Confirms the Association Between the ABCA7 rs3764650 Polymorphism and Alzheimer’s Disease Susceptibility

    Large-scale genome-wide association studies (GWAS) have revealed that the ABCA7 rs3764650 polymorphism (or its proxies, namely rs115550680, rs3752246, and rs4147929) is associated with Alzheimer’s disease (AD)...

    Guiyou Liu, Fujun Li, Shuyan Zhang, Yongshuai Jiang, Guoda Ma in Molecular Neurobiology (2014)

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