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Article
Open AccessVDJPipe: a pipelined tool for pre-processing immune repertoire sequencing data
Pre-processing of high-throughput sequencing data for immune repertoire profiling is essential to insure high quality input for downstream analysis. VDJPipe is a flexible, high-performance tool that can perfor...
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Open AccessVDJML: a file format with tools for capturing the results of inferring immune receptor rearrangements
The genes that produce antibodies and the immune receptors expressed on lymphocytes are not germline encoded; rather, they are somatically generated in each develo** lymphocyte by a process called V(D)J reco...
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Article
Open Accessowlcpp: a C++ library for working with OWL ontologies
The increasing use of ontologies highlights the need for a library for working with ontologies that is efficient, accessible from various programming languages, and compatible with common computational platforms.
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Protocol
Model-Based Global Analysis of Heterogeneous Experimental Data Using gfit
Regression analysis is indispensible for quantitative understanding of biological systems and for develo** accurate computational models. By applying regression analysis, one can validate models and quantify...