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Article
Open AccessIntegromeDB: an integrated system and biological search engine
With the growth of biological data in volume and heterogeneity, web search engines become key tools for researchers. However, general-purpose search engines are not specialized for the search of biological data.
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Article
Open AccessBiologicalNetworks - tools enabling the integration of multi-scale data for the host-pathogen studies
Understanding of immune response mechanisms of pathogen-infected host requires multi-scale analysis of genome-wide data. Data integration methods have proved useful to the study of biological processes in mode...
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Article
Open AccessBiologicalNetworks 2.0 - an integrative view of genome biology data
A significant problem in the study of mechanisms of an organism's development is the elucidation of interrelated factors which are making an impact on the different levels of the organism, such as genes, biolo...
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Chapter and Conference Paper
Data Mining by Navigation – An Experience with Systems Biology
This paper proposes a navigational method for mining by collecting evidences from diverse data sources. Since the representation method and even semantics of data elements differ widely from one data source to...
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Protocol
System Biology of Gene Regulation
A famous joke story that exhibits the traditionally awkward alliance between theory and experiment and showing the differences between experimental biologists and theoretical modelers is when a University send...
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Article
Open AccessPathSys: integrating molecular interaction graphs for systems biology
The goal of information integration in systems biology is to combine information from a number of databases and data sets, which are obtained from both high and low throughput experiments, under one data manag...
