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Open AccessChromosomal architecture changes upon cell differentiation
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Open AccessPolymer models of topological insulators
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Open AccessS cerevisiae genome as a confined equilibrium polymer brush
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Open AccessPolymer models of yeast S. cerevisiae genome organization
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Open AccessGenome-wide transcription start site map** of Bradyrhizobium japonicum grown free-living or in symbiosis – a rich resource to identify new transcripts, proteins and to study gene regulation
Differential RNA-sequencing (dRNA-seq) is indispensable for determination of primary transcriptomes. However, using dRNA-seq data to map transcriptional start sites (TSSs) and promoters genome-wide is a bioinf...
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Publisher Correction: Immune genes are primed for robust transcription by proximal long noncoding RNAs located in nuclear compartments
In the version of this article initially published, ‘+’ and ‘–’ labels were missing from the graph keys at the bottom of Fig. 8d. The error has been corrected in the HTML and PDF versions of the article.
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Publisher Correction: Heterochromatin drives compartmentalization of inverted and conventional nuclei
An Amendment to this paper has been published and can be accessed via a link at the top of the paper.
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Open AccessThe genome-wide multi-layered architecture of chromosome pairing in early Drosophila embryos
Genome organization involves cis and trans chromosomal interactions, both implicated in gene regulation, development, and disease. Here, we focus on trans interactions in Drosophila, where homologous chromosomes ...
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Open AccessThe 4D Nucleome Data Portal as a resource for searching and visualizing curated nucleomics data
The 4D Nucleome (4DN) Network aims to elucidate the complex structure and organization of chromosomes in the nucleus and the impact of their disruption in disease biology. We present the 4DN Data Portal ( ...
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Open AccessAuthor Correction: The 4D Nucleome Data Portal as a resource for searching and visualizing curated nucleomics data
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Open AccessLineage abundance estimation for SARS-CoV-2 in wastewater using transcriptome quantification techniques
Effectively monitoring the spread of SARS-CoV-2 mutants is essential to efforts to counter the ongoing pandemic. Predicting lineage abundance from wastewater, however, is technically challenging. We show that ...
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Open AccessDiverse silent chromatin states modulate genome compartmentalization and loop extrusion barriers
The relationships between chromosomal compartmentalization, chromatin state and function are poorly understood. Here by profiling long-range contact frequencies in HCT116 colon cancer cells, we distinguish thr...