7 Result(s)

Article

Lineage abundance estimation for SARS-CoV-2 in wastewater using transcriptome quantification techniques

Effectively monitoring the spread of SARS-CoV-2 mutants is essential to efforts to counter the ongoing pandemic. Predicting lineage abundance from wastewater, however, is technically challenging. We show that ...

Jasmijn A. Baaijens, Alessandro Zulli, Isabel M. Ott, Ioanna Nika… in Genome Biology (2022)

Article

Publisher Correction: Immune genes are primed for robust transcription by proximal long noncoding RNAs located in nuclear compartments

In the version of this article initially published, ‘+’ and ‘–’ labels were missing from the graph keys at the bottom of Fig. 8d. The error has been corrected in the HTML and PDF versions of the article.

Stephanie Fanucchi, Ezio T. Fok, Emiliano Dalla, Youtaro Shibayama… in Nature Genetics (2019)

Article

Genome-wide transcription start site map** of Bradyrhizobium japonicum grown free-living or in symbiosis – a rich resource to identify new transcripts, proteins and to study gene regulation

Differential RNA-sequencing (dRNA-seq) is indispensable for determination of primary transcriptomes. However, using dRNA-seq data to map transcriptional start sites (TSSs) and promoters genome-wide is a bioinf...

Jelena Čuklina, Julia Hahn, Maxim Imakaev, Ulrich Omasits… in BMC Genomics (2016)

Article

Chromosomal architecture changes upon cell differentiation

Maxim Imakaev, Geoffrey Fudenberg, Leonid Mirny in Epigenetics & Chromatin (2013)

Article

Polymer models of topological insulators

Boryana Doyle, Maxim Imakaev, Geoffrey Fudenberg, Leonid Mirny in Epigenetics & Chromatin (2013)

Article

S cerevisiae genome as a confined equilibrium polymer brush

Anton Goloborodko, Jon Matthew Belton, Geoffrey Fudenberg… in Epigenetics & Chromatin (2013)

Article

Polymer models of yeast S. cerevisiae genome organization

Geoff Fudenberg, Jon-Matthew Belton, Anton Goloborodko… in Epigenetics & Chromatin (2013)