7 Result(s)

Article

Chromosomal architecture changes upon cell differentiation

Maxim Imakaev, Geoffrey Fudenberg, Leonid Mirny in Epigenetics & Chromatin (2013)

Article

Polymer models of topological insulators

Boryana Doyle, Maxim Imakaev, Geoffrey Fudenberg, Leonid Mirny in Epigenetics & Chromatin (2013)

Article

S cerevisiae genome as a confined equilibrium polymer brush

Anton Goloborodko, Jon Matthew Belton, Geoffrey Fudenberg… in Epigenetics & Chromatin (2013)

Article

Polymer models of yeast S. cerevisiae genome organization

Geoff Fudenberg, Jon-Matthew Belton, Anton Goloborodko… in Epigenetics & Chromatin (2013)

Article

Genome-wide transcription start site map** of Bradyrhizobium japonicum grown free-living or in symbiosis – a rich resource to identify new transcripts, proteins and to study gene regulation

Differential RNA-sequencing (dRNA-seq) is indispensable for determination of primary transcriptomes. However, using dRNA-seq data to map transcriptional start sites (TSSs) and promoters genome-wide is a bioinf...

Jelena Čuklina, Julia Hahn, Maxim Imakaev, Ulrich Omasits… in BMC Genomics (2016)

Article

Lineage abundance estimation for SARS-CoV-2 in wastewater using transcriptome quantification techniques

Effectively monitoring the spread of SARS-CoV-2 mutants is essential to efforts to counter the ongoing pandemic. Predicting lineage abundance from wastewater, however, is technically challenging. We show that ...

Jasmijn A. Baaijens, Alessandro Zulli, Isabel M. Ott, Ioanna Nika… in Genome Biology (2022)

Article

Diverse silent chromatin states modulate genome compartmentalization and loop extrusion barriers

The relationships between chromosomal compartmentalization, chromatin state and function are poorly understood. Here by profiling long-range contact frequencies in HCT116 colon cancer cells, we distinguish thr...

George Spracklin, Nezar Abdennur, Maxim Imakaev… in Nature Structural & Molecular Biology (2023)