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Cross-Linking Mass Spectrometry Analysis of Metastable Compact Structures in Intrinsically Disordered Proteins

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  1. Article

    Open Access

    Hairpin trimer transition state of amyloid fibril

    Protein fibril self-assembly is a universal transition implicated in neurodegenerative diseases. Although fibril structure/growth are well characterized, fibril nucleation is poorly understood. Here, we use a ...

    Levent Sari, Sofia Bali, Lukasz A. Joachimiak, Milo M. Lin in Nature Communications (2024)

  2. Article

    Open Access

    Dual domain recognition determines SARS-CoV-2 PLpro selectivity for human ISG15 and K48-linked di-ubiquitin

    The Papain-like protease (PLpro) is a domain of a multi-functional, non-structural protein 3 of coronaviruses. PLpro cleaves viral polyproteins and posttranslational conjugates with poly-ubiquitin and protecti...

    Pawel M. Wydorski, Jerzy Osipiuk, Benjamin T. Lanham in Nature Communications (2023)

  3. Article

    Open Access

    FTD-tau S320F mutation stabilizes local structure and allosterically promotes amyloid motif-dependent aggregation

    Amyloid deposition of the microtubule-associated protein tau is associated with neurodegenerative diseases. In frontotemporal dementia with abnormal tau (FTD-tau), missense mutations in tau enhance its aggrega...

    Dailu Chen, Sofia Bali, Ruhar Singh, Aleksandra Wosztyl in Nature Communications (2023)

  4. Article

    Open Access

    Network of hotspot interactions cluster tau amyloid folds

    Cryogenic electron microscopy has revealed unprecedented molecular insight into the conformations of β-sheet-rich protein amyloids linked to neurodegenerative diseases. It remains unknown how a protein can ado...

    Vishruth Mullapudi, Jaime Vaquer-Alicea, Vaibhav Bommareddy in Nature Communications (2023)

  5. Article

    Open Access

    DnaJC7 binds natively folded structural elements in tau to inhibit amyloid formation

    Molecular chaperones, including Hsp70/J-domain protein (JDP) families, play central roles in binding substrates to prevent their aggregation. How JDPs select different conformations of substrates remains poorl...

    Zhiqiang Hou, Pawel M. Wydorski, Valerie A. Perez in Nature Communications (2021)

  6. Article

    Open Access

    Tau strains shape disease

    Tauopathies consist of over 25 different neurodegenerative diseases that include argyrophilic grain disease (AGD), progressive supranuclear palsy (PSP), corticobasal degeneration (CBD), and Pick’s disease (PiD...

    Jaime Vaquer-Alicea, Marc I. Diamond, Lukasz A. Joachimiak in Acta Neuropathologica (2021)

  7. Article

    Open Access

    Biophysical properties of a tau seed

    Pathogenesis of tauopathies involves conversion of tau monomer into pathological tau conformers that serve as templates to recruit native tau into growing assemblies. Small soluble tau seeds have been proposed...

    Zhiqiang Hou, Dailu Chen, Bryan D. Ryder, Lukasz A. Joachimiak in Scientific Reports (2021)

  8. Article

    Open Access

    Regulatory inter-domain interactions influence Hsp70 recruitment to the DnaJB8 chaperone

    The Hsp40/Hsp70 chaperone families combine versatile folding capacity with high substrate specificity, which is mainly facilitated by Hsp40s. The structure and function of many Hsp40s remain poorly understood,...

    Bryan D. Ryder, Irina Matlahov, Sofia Bali, Jaime Vaquer-Alicea in Nature Communications (2021)

  9. Article

    Open Access

    Tau local structure shields an amyloid-forming motif and controls aggregation propensity

    Tauopathies are neurodegenerative diseases characterized by intracellular amyloid deposits of tau protein. Missense mutations in the tau gene (MAPT) correlate with aggregation propensity and cause dominantly inhe...

    Dailu Chen, Kenneth W. Drombosky, Zhiqiang Hou, Levent Sari in Nature Communications (2019)