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  1. Article

    Open Access

    Dynamics of replication origin over-activation

    Safeguards against excess DNA replication are often dysregulated in cancer, and driving cancer cells towards over-replication is a promising therapeutic strategy. We determined DNA synthesis patterns in cancer...

    Haiqing Fu, Christophe E. Redon, Bhushan L. Thakur, Koichi Utani in Nature Communications (2021)

  2. Article

    Open Access

    Currently favored sampling practices for tumor sequencing can produce optimal results in the clinical setting

    Tumor heterogeneity is a consequence of clonal evolution, resulting in a fractal-like architecture with spatially separated main clones, sub-clones and single-cells. As sequencing an entire tumor is not feasib...

    Lőrinc S. Pongor, Gyöngyi Munkácsy, Ildikó Vereczkey, Imre Pete in Scientific Reports (2020)

  3. Article

    Open Access

    BAMscale: quantification of next-generation sequencing peaks and generation of scaled coverage tracks

    Next-generation sequencing allows genome-wide analysis of changes in chromatin states and gene expression. Data analysis of these increasingly used methods either requires multiple analysis steps, or extensive...

    Lorinc S. Pongor, Jacob M. Gross, Roberto Vera Alvarez in Epigenetics & Chromatin (2020)

  4. Article

    Open Access

    The RepID–CRL4 ubiquitin ligase complex regulates metaphase to anaphase transition via BUB3 degradation

    The spindle assembly checkpoint (SAC) prevents premature chromosome segregation by inactivating the anaphase promoting complex/cyclosome (APC/C) until all chromosomes are properly attached to mitotic spindles....

    Sang-Min Jang, Jenny F. Nathans, Haiqing Fu, Christophe E. Redon in Nature Communications (2020)