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  1. No Access

    Article

    Named entity recognition (NER) for Chinese agricultural diseases and pests based on discourse topic and attention mechanism

    The named entities of agricultural diseases and pests are featured by complex word-formation and universal phenomena of word combination and entity embedding; in particular, in the domain of Chinese agricultur...

    Chao Wang, Jiale Gao, Haidi Rao, Aiwen Chen, ** He, Jun Jiao in Evolutionary Intelligence (2024)

  2. Article

    Open Access

    LncRNA–protein interaction prediction with reweighted feature selection

    LncRNA–protein interactions are ubiquitous in organisms and play a crucial role in a variety of biological processes and complex diseases. Many computational methods have been reported for lncRNA–protein inter...

    Guohao Lv, Yingchun **a, Zhao Qi, Zihao Zhao, Lianggui Tang in BMC Bioinformatics (2023)

  3. Article

    Open Access

    RT-IVT method allows multiplex real-time quantification of in vitro transcriptional mRNA production

    For the past 30 years, in vitro transcription (IVT) technology has been extensively used for RNA production or for basic transcriptional mechanism research. However, methods for mRNA quantification still need ...

    Fengyu Zhang, Yipeng Wang, **aomeng Wang, Hongjie Dong, Min Chen in Communications Biology (2023)

  4. No Access

    Reference Work Entry In depth

    Semantic Technology for Agriculture

    Lichuan Gu, ** He in Encyclopedia of Digital Agricultural Technologies (2023)

  5. No Access

    Living Reference Work Entry In depth

    Semantic Technology for Agriculture

    Lichuan Gu, ** He in Encyclopedia of Smart Agriculture Technologies

  6. Article

    Open Access

    A virus–target host proteins recognition method based on integrated complexes data and seed extension

    Target drugs play an important role in the clinical treatment of virus diseases. Virus-encoded proteins are widely used as targets for target drugs. However, they cannot cope with the drug resistance caused by...

    Shengrong **a, Yingchun **a, Chulei **ang, Hui Wang, Chao Wang in BMC Bioinformatics (2022)

  7. Article

    Open Access

    Protein functional module identification method combining topological features and gene expression data

    The study of protein complexes and protein functional modules has become an important method to further understand the mechanism and organization of life activities. The clustering algorithms used to analyze t...

    Zihao Zhao, Wenjun Xu, Aiwen Chen, Yueyue Han, Shengrong **a, ChuLei **ang in BMC Genomics (2021)

  8. No Access

    Article

    A collective entity linking algorithm with parallel computing on large-scale knowledge base

    Entity linking is a central concern of automatic knowledge question answering and knowledge base population. Traditional collective entity linking approaches only consider one of the entity contexts or semanti...

    Yingchun **a, **ngyue Wang, Lichuan Gu, Qijuan Gao in The Journal of Supercomputing (2020)

  9. No Access

    Article

    A parallel computing-based Deep Attention model for named entity recognition

    Named entity recognition (NER) is an important task in natural language processing and has been widely studied. In recent years, end-to-end NER with bidirectional long short-term memory (BiLSTM) has received m...

    **aojun Liu, Ning Yang, Yu Jiang, Lichuan Gu in The Journal of Supercomputing (2020)

  10. No Access

    Chapter and Conference Paper

    Label Distribution Learning-Based Semantic Retrieval Model on Knowledge Graph

    The traditional retrieval technology is difficult to grip users’ intention accurately and apace in massive and fragmented data. To organize fragmented knowledge in reason and retrieve useful knowledge to recom...

    Chao Wang, Ning Sun, Jiajun Zhang, Yingchun **a in Urban Intelligence and Applications (2020)

  11. No Access

    Chapter and Conference Paper

    Agricultural Products Risk Assessment Model Based on Enhanced RNN

    In recent years, with the improvement of the people’s living conditions and the arousal of consumers’ consciousness, the problem of Agricultural Product Quality Safety becomes a hot topic that more and more pe...

    Zihao Zhao, Jian Li, **anzhang Shi, Aiwen Chen in Urban Intelligence and Applications (2020)

  12. No Access

    Chapter

    A Unified Catalytic Mechanism for Cyclic di-NMP Hydrolysis by DHH–DHHA1 Phosphodiesterases

    Cyclic di-AMP is a vital second messenger other than cyclic di-GMP that regulates diverse cellular physiological processes in many bacteria. Its cellular level is controlled by the counter-actions of diadenyla...

    Lichuan Gu, Qing He in Microbial Cyclic Di-Nucleotide Signaling (2020)

  13. No Access

    Chapter and Conference Paper

    Sentiment Analysis of Chinese Agricultural News Based on the JST Model

    Agricultural news usually describes objective facts, and its subjectivity is weak. Conventional sentiment analysis methods which can get high accuracy by definite sentiment trend are difficult to apply to the ...

    Chao Wang, Hui Wang, Caifeng Ye, Jiale Gao, Fei Li in Urban Intelligence and Applications (2020)

  14. No Access

    Chapter and Conference Paper

    Recommendation Based on Attention Degree and Entropy

    With the development of the Internet, the problem of information overload becomes more and more serious. The personalized recommendation technology can establish user profiles through the user’s behavior and o...

    Fei Li, Mengyao Wang, Caifeng Ye, Hui Wang in Urban Intelligence and Applications (2020)

  15. No Access

    Chapter and Conference Paper

    Extracting Keyphrases from News Articles Using Crowdsourcing

    Keyphrase extraction is a very important task in text mining. However, keyphrase extraction of news articles cannot be addressed by existing machine-based approaches effectively because of various reasons. Thi...

    Qingren Wang, **qin Zhong, Lichuan Gu, Kai Yang in Urban Intelligence and Applications (2020)

  16. Article

    Open Access

    BrlR from Pseudomonas aeruginosa is a receptor for both cyclic di-GMP and pyocyanin

    The virulence factor pyocyanin and the intracellular second messenger cyclic diguanylate monophosphate (c-di-GMP) play key roles in regulating biofilm formation and multi-drug efflux pump expression in Pseudomona...

    Feng Wang, Qing He, Jia Yin, Sujuan Xu, Wei Hu, Lichuan Gu in Nature Communications (2018)

  17. No Access

    Article

    Succinate-acetate permease from Citrobacter koseri is an anion channel that unidirectionally translocates acetate

    Acetate is an important metabolite in metabolism and cell signaling. Succinate-Acetate Permease (SatP) superfamily proteins are known to be responsible for acetate transport across membranes, but the nature of...

    Biao Qiu, Bingqing **a, Qingtong Zhou, Yan Lu, Miaomiao He in Cell Research (2018)

  18. No Access

    Chapter and Conference Paper

    Design and Implementation of a Self-powered Sensor Network Node

    For the applications of Wireless Sensor Networks (WSN) randomly deployed in the complicated environment, the most important challenge is to design sensor networks that require long system lifetime and some me...

    Jun Jiao, Moshi Wang, Lichuan Gu in Geo-Spatial Knowledge and Intelligence (2018)

  19. Article

    Open Access

    The PilZ domain of MrkH represents a novel DNA binding motif

    Feng Wang, Qing He, Kaixuan Su, Fei Gao, Yan Huang, Zong Lin, Deyu Zhu in Protein & Cell (2016)

  20. Article

    Open Access

    Dcsbis (PA2771) from Pseudomonas aeruginosa is a highly active diguanylate cyclase with unique activity regulation

    C-di-GMP (3’,5’ -Cyclic diguanylic acid) is an important second messenger in bacteria that influences virulence, motility, biofilm formation, and cell division. The level of c-di-GMP in cells is controlled by ...

    Ying Chen, Shiheng Liu, Cuilan Liu, Yan Huang, Kaikai Chi in Scientific Reports (2016)

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