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  1. No Access

    Article

    Anti-Candida sp. activity of Astronium urundeuva derivatives free and loaded into a nanostructured lipid system

    Infections caused by Candida species increased, as well as species resistant to the most conventional antimicrobials. Thus, the search for new natural sources of antimicrobials without adverse effects also increa...

    Bruna Vidal Bonifácio, Flávio Alexandre Carvalho, Luiza de Oliveira Mota in Chemical Papers (2024)

  2. Article

    Open Access

    Growth in fluctuating light buffers plants against photorespiratory perturbations

    Photorespiration (PR) is the pathway that detoxifies the product of the oxygenation reaction of Rubisco. It has been hypothesized that in dynamic light environments, PR provides a photoprotective function. To ...

    Thekla von Bismarck, Philipp Wendering, Leonardo Perez de Souza in Nature Communications (2023)

  3. No Access

    Protocol

    Databases and Tools to Investigate Protein-Metabolite Interactions

    Protein-metabolite interactions (PMIs) are directly responsible for the regulation of numerous processes. From the direct regulation of enzymes to complex developmental processes intermediated by hormones, PMI...

    Leonardo Perez de Souza, Alisdair R. Fernie in Cell-Wide Identification of Metabolite-Pro… (2023)

  4. Article

    Open Access

    Azacytidine arrests ripening in cultivated strawberry (Fragaria × ananassa) by repressing key genes and altering hormone contents

    Strawberry ripening involves a number of irreversible biochemical reactions that cause sensory changes through accumulation of sugars, acids and other compounds responsible for fruit color and flavor. The proc...

    Félix Juan Martínez-Rivas, Rosario Blanco-Portales in BMC Plant Biology (2022)

  5. Article

    Open Access

    The AtMYB60 transcription factor regulates stomatal opening by modulating oxylipin synthesis in guard cells

    Stomata are epidermal pores formed by pairs of specialized guard cells, which regulate gas exchanges between the plant and the atmosphere. Modulation of transcription has emerged as an important level of regul...

    Fabio Simeoni, Aleksandra Skirycz, Laura Simoni, Giulia Castorina in Scientific Reports (2022)

  6. No Access

    Protocol

    Measurement of Flower Metabolite Concentrations Using Gas Chromatography–Mass Spectrometry and High-Performance Liquid Chromatography–Mass Spectrometry

    Metabolite profiling aiming at quantifying the metabolome of flowers is emerging as a suitable tool to understand the metabolic complexity of these reproductive organs and the associations between primary and ...

    Monica Borghi, Leonardo Perez de Souza, Alisdair R. Fernie in Plant Gametogenesis (2022)

  7. Article

    Open Access

    Multi-omics approaches explain the growth-promoting effect of the apocarotenoid growth regulator zaxinone in rice

    The apocarotenoid zaxinone promotes growth and suppresses strigolactone biosynthesis in rice. To shed light on the mechanisms underlying its growth-promoting effect, we employed a combined omics approach integ...

    Jian You Wang, Saleh Alseekh, Tingting **ao, Abdugaffor Ablazov in Communications Biology (2021)

  8. No Access

    Article

    Ultra-high-performance liquid chromatography high-resolution mass spectrometry variants for metabolomics research

    Ultra-high-performance liquid chromatography high-resolution mass spectrometry (UHPLC–HRMS) variants currently represent the best tools to tackle the challenges of complexity and lack of comprehensive coverage...

    Leonardo Perez de Souza, Saleh Alseekh, Federico Scossa in Nature Methods (2021)

  9. No Access

    Article

    Mass spectrometry-based metabolomics: a guide for annotation, quantification and best reporting practices

    Mass spectrometry-based metabolomics approaches can enable detection and quantification of many thousands of metabolite features simultaneously. However, compound identification and reliable quantification are...

    Saleh Alseekh, Asaph Aharoni, Yariv Brotman, Kévin Contrepois in Nature Methods (2021)

  10. Article

    Open Access

    Global map** of protein–metabolite interactions in Saccharomyces cerevisiae reveals that Ser-Leu dipeptide regulates phosphoglycerate kinase activity

    Protein–metabolite interactions are of crucial importance for all cellular processes but remain understudied. Here, we applied a biochemical approach named PROMIS, to address the complexity of the protein–smal...

    Marcin Luzarowski, Rubén Vicente, Andrei Kiselev, Mateusz Wagner in Communications Biology (2021)

  11. Article

    Open Access

    Evidence of drought memory in Dipteryx alata indicates differential acclimation of plants to savanna conditions

    The remarkable phytogeographic characteristics of the Brazilian savanna (Cerrado) resulted in a vegetation domain composed of plants with high structural and functional diversity to tolerate climate extremes. ...

    Rauander D. F. B. Alves, Paulo E. Menezes-Silva, Leticia F. Sousa in Scientific Reports (2020)

  12. Article

    Open Access

    A cold change: how short low temperature exposure affects primary metabolism in leaves and stems of two eucalyptus species

    Plants often modify their metabolism in order to regain homeostasis and maintain survival in the face of stressful conditions. Here, two species of eucalyptus, E. globulus and E. grandis (adapted and non-adapted ...

    Adilson Pereira Domingues-Junior in Theoretical and Experimental Plant Physiol… (2019)

  13. Article

    Open Access

    On the natural diversity of phenylacylated-flavonoid and their in planta function under conditions of stress

    Plants contain light signaling systems and undergo metabolic perturbation and reprogramming under light stress in order to adapt to environmental changes. Flavonoids are one of the largest classes of natural p...

    Takayuki Tohge, Leonardo Perez de Souza, Alisdair R. Fernie in Phytochemistry Reviews (2018)

  14. No Access

    Protocol

    Carbon Atomic Survey for Identification of Selected Metabolic Fluxes

    Stable-isotope-labeling experiments have become a frequently used tool to investigate different metabolic systems. They have been recently applied to several comprehensive studies in plant metabolomics providi...

    Leonardo Perez de Souza, Alisdair R. Fernie, Takayuki Tohge in Plant Metabolomics (2018)

  15. No Access

    Protocol

    Gas Chromatography–Mass Spectrometry-Based 13C-Labeling Studies in Plant Metabolomics

    Stable-isotope labeling analysis has been used to discover new metabolic pathways and their key regulatory points in a wide range of organisms. Given the complexity of the plant metabolic network, this analysi...

    Valéria F. Lima, Leonardo Perez de Souza, Thomas C. R. Williams in Plant Metabolomics (2018)

  16. No Access

    Protocol

    13CO2 Labeling and Mass Spectral Analysis of Photorespiration

    Photorespiratory metabolism is compartmented over the chloroplast, peroxisome, cytosol, and mitochondria, and due to its complex structure it is often the case that metabolite levels alone are not able to full...

    Leonardo Perez de Souza, Marek Szecówka, Alisdair R. Fernie in Photorespiration (2017)