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  1. Article

    Open Access

    hoxc12/c13 as key regulators for rebooting the developmental program in Xenopus limb regeneration

    During organ regeneration, after the initial responses to injury, gene expression patterns similar to those in normal development are reestablished during subsequent morphogenesis phases. This supports the ide...

    Aiko Kawasumi-Kita, Sang-Woo Lee, Daisuke Ohtsuka, Kaori Niimi in Nature Communications (2024)

  2. Article

    Open Access

    An archetype and scaling of developmental tissue dynamics across species

    Morphometric studies have revealed the existence of simple geometric relationships among various animal shapes. However, we have little knowledge of the mathematical principles behind the morphogenetic dynamic...

    Yoshihiro Morishita, Sang-Woo Lee, Takayuki Suzuki in Nature Communications (2023)

  3. Article

    Open Access

    Developmental independence of median fins from the larval fin fold revises their evolutionary origin

    The median fins of modern fish that show discrete forms (dorsal, anal, and caudal fins) are derived from a continuous fold-like structure, both in ontogeny and phylogeny. The median fin fold (MFF) hypothesis a...

    Kazuhide Miyamoto, Koichi Kawakami, Koji Tamura, Gembu Abe in Scientific Reports (2022)

  4. Article

    Open Access

    Regrowth of zebrafish caudal fin regeneration is determined by the amputated length

    Fish have a high ability to regenerate fins, including the caudal fin. After caudal fin amputation, original bi-lobed morphology is reconstructed during its rapid regrowth. It is still controversial whether po...

    Toshiaki Uemoto, Gembu Abe, Koji Tamura in Scientific Reports (2020)

  5. Article

    Open Access

    Homeobox code model of heterodont tooth in mammals revised

    Heterodonty is one of the hallmarks of mammals. It has been suggested that, homeobox genes, differentially expressed in the ectomesenchyme of the jaw primordium along the distal-proximal axis, would determine ...

    Yoshio Wakamatsu, Shiro Egawa, Yukari Terashita, Hiroshi Kawasaki in Scientific Reports (2019)

  6. Article

    Open Access

    Functional roles of Aves class-specific cis-regulatory elements on macroevolution of bird-specific features

    Unlike microevolutionary processes, little is known about the genetic basis of macroevolutionary processes. One of these magnificent examples is the transition from non-avian dinosaurs to birds that has create...

    Ryohei Seki, Cai Li, Qi Fang, Shinichi Hayashi, Shiro Egawa in Nature Communications (2017)

  7. Article

    Open Access

    Open and closed evolutionary paths for drastic morphological changes, involving serial gene duplication, sub-functionalization and selection

    Twin-tail goldfish strains are examples of drastic morphological alterations that emerged through domestication. Although this mutation is known to be caused by deficiency of one of two duplicated chordin genes, ...

    Gembu Abe, Shu-Hua Lee, Ing-Jia Li, Chun-Ju Chang, Koji Tamura in Scientific Reports (2016)

  8. Article

    Open Access

    Trunk exoskeleton in teleosts is mesodermal in origin

    The vertebrate mineralized skeleton is known to have first emerged as an exoskeleton that extensively covered the fossil jawless fish. The evolutionary origin of this exoskeleton has long been attributed to th...

    Atsuko Shimada, Toru Kawanishi, Takuya Kaneko, Hiroki Yoshihara in Nature Communications (2013)

  9. No Access

    Article

    The T-box genes Tbx4 and Tbx5 regulate limb outgrowth and identity

    During embryonic development, initially similar fields can develop into distinct structures, such as the vertebrate fore- and hindlimbs. Although considerable progress has been made in our understanding of the...

    Concepción Rodriguez-Esteban, Tohru Tsukui, Sayuri Yonei, Jorge Magallon in Nature (1999)

  10. No Access

    Article

    Pitx2 determines left–right asymmetry of internal organs in vertebrates

    The handedness of visceral organs is conserved among vertebrates and is regulated by asymmetric signals relayed by molecules such as Shh, Nodal and activin. The gene Pitx2 is expressed in the left lateral plate m...

    Aimee K. Ryan, Bruce Blumberg, Concepción Rodriguez-Esteban, Sayuri Yonei-Tamura in Nature (1998)

  11. No Access

    Article

    Retinoic acid induces polarizing activity but is unlikely to be a morphogen in the chick limb bud

    RETINOIC acid is a putative morphogen in limb formation in the chick and other vertebrates1-5. In chick limb formation, it is thought that retinoic acid is released from the zone of polarizing activity (ZPA) and ...

    Sumihare Noji, Tsutomu Nohno, Eiki Koyama, Kohki Muto, Kazuhiko Ohyama in Nature (1991)