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    Article

    Proteome rebalancing in transgenic Camelina occurs within the enlarged proteome induced by β-carotene accumulation and storage protein suppression

    Oilseed crops are global commodities for their oil and protein seed content. We have engineered the oilseed Camelina sativa to exhibit increased protein content with a slight decrease in oil content. The introduc...

    Monica A. Schmidt, Ken Pendarvis in Transgenic Research (2017)

  2. Article

    Open Access

    Systems toxicology identifies mechanistic impacts of 2-amino-4,6-dinitrotoluene (2A-DNT) exposure in Northern Bobwhite

    A systems toxicology investigation comparing and integrating transcriptomic and proteomic results was conducted to develop holistic effects characterizations for the wildlife bird model, Northern bobwhite (Colinu...

    Kurt A. Gust, Bindu Nanduri, Arun Rawat, Mitchell S. Wilbanks, Choo Yaw Ang in BMC Genomics (2015)

  3. Article

    Open Access

    Proteogenomic map** of Mycoplasma hyopneumoniae virulent strain 232

    Mycoplasma hyopneumoniae causes respiratory disease in swine and contributes to the porcine respiratory disease complex, a major disease problem in the swine industry. The M. hyopneumoniae strain 232 genome is on...

    Ken Pendarvis, Matthew P Padula, Jessica L Tacchi, Andrew C Petersen in BMC Genomics (2014)

  4. Article

    Open Access

    Nuclear proteome response to cell wall removal in rice (Oryza sativa)

    Plant cells are routinely exposed to various pathogens and environmental stresses that cause cell wall perturbations. Little is known of the mechanisms that plant cells use to sense these disturbances and tran...

    Hana Mujahid, Feng Tan, Jian Zhang, Babi Ramesh Reddy Nallamilli in Proteome Science (2013)

  5. Article

    Open Access

    Nuclear Factor kappa B is central to Marek’s Disease herpesvirus induced neoplastic transformation of CD30 expressing lymphocytes in-vivo

    Marek’s Disease (MD) is a hyperproliferative, lymphomatous, neoplastic disease of chickens caused by the oncogenic Gallid herpesvirus type 2 (GaHV-2; MDV). Like several human lymphomas the neoplastic MD lymphoma ...

    Shyamesh Kumar, Dusan Kunec, Joram J Buza, Hsin-I Chiang in BMC Systems Biology (2012)

  6. Article

    Open Access

    An automated proteomic data analysis workflow for mass spectrometry

    Mass spectrometry-based protein identification methods are fundamental to proteomics. Biological experiments are usually performed in replicates and proteomic analyses generate huge datasets which need to be i...

    Ken Pendarvis, Ranjit Kumar, Shane C Burgess, Bindu Nanduri in BMC Bioinformatics (2009)