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  1. Article

    Open Access

    Neoadjuvant talazoparib in patients with germline BRCA1/2 mutation-positive, early-stage triple-negative breast cancer: exploration of tumor BRCA mutational status

    Talazoparib monotherapy in patients with germline BRCA-mutated, early-stage triple-negative breast cancer (TNBC) showed activity in the neoadjuvant setting in the phase II NEOTALA study (NCT03499353). These bioma...

    Melinda L. Telli, Jennifer K. Litton, J. Thaddeus Beck, Jason M. Jones in Breast Cancer (2024)

  2. Article

    Open Access

    Genomic analysis of advanced breast cancer tumors from talazoparib-treated gBRCA1/2mut carriers in the ABRAZO study

    These analyses explore the impact of homologous recombination repair gene mutations, including BRCA1/2 mutations and homologous recombination deficiency (HRD), on the efficacy of the poly(ADP-ribose) polymerase (...

    Nicholas C. Turner, A. Douglas Laird, Melinda L. Telli, Hope S. Rugo in npj Breast Cancer (2023)

  3. Article

    Open Access

    A pan-cancer landscape of telomeric content shows that RAD21 and HGF alterations are associated with longer telomeres

    Cancer cells can proliferate indefinitely through telomere maintenance mechanisms. These mechanisms include telomerase-dependent elongation, mediated by TERT activation, and alternative lengthening of telomeres (...

    Radwa Sharaf, Meagan Montesion, Julia F. Hopkins, Jiarong Song in Genome Medicine (2022)

  4. Article

    Open Access

    Pan-cancer analysis of the effect of biopsy site on tumor mutational burden observations

    Tumor mutational burden (TMB) has been proposed as a predictive biomarker of response to immunotherapy. Efforts to standardize TMB scores for use in the clinic and to identify the factors that could impact TMB...

    Simon Papillon-Cavanagh, Julia F. Hopkins, Shakti H. Ramkissoon in Communications Medicine (2021)

  5. Article

    Open Access

    Ubiquitin fusion proteins in algae: implications for cell biology and the spread of photosynthesis

    The process of gene fusion involves the formation of a single chimeric gene from multiple complete or partial gene sequences. Gene fusion is recognized as an important mechanism by which genes and their protei...

    Shannon J. Sibbald, Julia F. Hopkins, Gina V. Filloramo, John M. Archibald in BMC Genomics (2019)

  6. Article

    Open Access

    Mitochondrial mutations drive prostate cancer aggression

    Nuclear mutations are well known to drive tumor incidence, aggression and response to therapy. By contrast, the frequency and roles of mutations in the maternally inherited mitochondrial genome are poorly unde...

    Julia F. Hopkins, Veronica Y. Sabelnykova, Joachim Weischenfeldt in Nature Communications (2017)

  7. Article

    Open Access

    Germline BRCA2 mutations drive prostate cancers with distinct evolutionary trajectories

    Germline mutations in the BRCA2 tumour suppressor are associated with both an increased lifetime risk of develo** prostate cancer (PCa) and increased risk of aggressive disease. To understand this aggression, h...

    Renea A. Taylor, Michael Fraser, Julie Livingstone in Nature Communications (2017)

  8. No Access

    Article

    Genomic hallmarks of localized, non-indolent prostate cancer

    Prostate tumours are highly variable in their response to therapies, but clinically available prognostic factors can explain only a fraction of this heterogeneity. Here we analysed 200 whole-genome sequences a...

    Michael Fraser, Veronica Y. Sabelnykova, Takafumi N. Yamaguchi in Nature (2017)

  9. Article

    Open Access

    Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs

    Cryptophyte and chlorarachniophyte algae are transitional forms in the widespread secondary endosymbiotic acquisition of photosynthesis by engulfment of eukaryotic algae. Unlike most secondary plastid-bearing ...

    Bruce A. Curtis, Goro Tanifuji, Fabien Burki, Ansgar Gruber, Manuel Irimia in Nature (2012)

  10. No Access

    Chapter

    Plastid Evolution and the Nuclear Genomic “Footprint” of Red and Green Algal Endosymbionts

    Plastids are the descendents of once free-living cyanobacterial endosymbionts and are generally believed to have evolved only once during eukaryotic evolution, in a common ancestor shared by red, green, and gl...

    Julia F. Hopkins, John M. Archibald in Red Algae in the Genomic Age (2010)