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  1. Article

    Open Access

    Next-generation fungal identification using target enrichment and Nanopore sequencing

    Rapid and accurate pathogen identification is required for disease management. Compared to sequencing entire genomes, targeted sequencing may be used to direct sequencing resources to genes of interest for mic...

    Pei-Ling Yu, James C. Fulton, Owen H. Hudson, Jose C. Huguet-Tapia in BMC Genomics (2023)

  2. Article

    Open Access

    A synthetic ‘essentialome’ for axenic culturing of ‘Candidatus Liberibacter asiaticus’

    ‘Candidatus Liberibacter asiaticus’ (CLas) is associated with the devastating citrus ‘greening’ disease. All attempts to achieve axenic growth and complete Koch’s postulates with CLas have failed to date, at best...

    Lulu Cai, Mukesh Jain, Alejandra Munoz-Bodnar, Jose C. Huguet-Tapia in BMC Research Notes (2022)

  3. Article

    Open Access

    Broad-spectrum resistance to bacterial blight in rice using genome editing

    Bacterial blight of rice is an important disease in Asia and Africa. The pathogen, Xanthomonas oryzae pv. oryzae (Xoo), secretes one or more of six known transcription-activator-like effectors (TALes) that bind s...

    Ricardo Oliva, Chonghui Ji, Genelou Atienza-Grande in Nature Biotechnology (2019)

  4. Article

    Open Access

    Diagnostic kit for rice blight resistance

    Blight-resistant rice lines are the most effective solution for bacterial blight, caused by Xanthomonas oryzae pv. oryzae (Xoo). Key resistance mechanisms involve SWEET genes as susceptibility factors. Bacterial ...

    Joon-Seob Eom, Dang** Luo, Genelou Atienza-Grande, Jungil Yang in Nature Biotechnology (2019)

  5. Article

    Open Access

    Pacbio sequencing of copper-tolerant Xanthomonas citri reveals presence of a chimeric plasmid structure and provides insights into reassortment and shuffling of transcription activator-like effectors among X. citri strains

    Xanthomonas citri, a causal agent of citrus canker, has been a well-studied model system due to recent availability of whole genome sequences of multiple strains from different geographical regions. Major limitat...

    Alberto M. Gochez, Jose C. Huguet-Tapia, Gerald V. Minsavage in BMC Genomics (2018)