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Evidence for the adaptive significance of enzyme activity levels: Interspecific variation in α-GPDH and ADH in Drosophila

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  1. Article

    Regulatory gene adaptation: An evolutionary model

    There is increasing support for the notion that changes in regulatory loci have played a major role in eukaryotic evolution. Assuming a model of genetic regulation based upon presently accepted views of the or...

    Philip W Hedrick, John F McDonald in Heredity (1980)

  2. Article

    Long terminal repeat retrotransposons of Oryza sativa

    Long terminal repeat (LTR) retrotransposons constitute a major fraction of the genomes of higher plants. For example, retrotransposons comprise more than 50% of the maize genome and more than 90% of the wheat ...

    Eugene M McCarthy, **gdong Liu, Gao Lizhi, John F McDonald in Genome Biology (2002)

  3. Article

    Long terminal repeat retrotransposons of Mus musculus

    Long terminal repeat (LTR) retrotransposons make up a large fraction of the typical mammalian genome. They comprise about 8% of the human genome and approximately 10% of the mouse genome. On account of their a...

    Eugene M McCarthy, John F McDonald in Genome Biology (2004)

  4. Article

    Ancient retroviral insertions among human populations

    Human endogenous retroviruses (HERVs) represent vestiges of ancient infections that resulted in stable integration of the viral genome. These insertional elements of viral origin are in fact molecular fossils ...

    Rene J. Herrera, Robert K. Lowery, Abraham Alfonso in Journal of Human Genetics (2006)

  5. Article

    Open Access

    Identification, characterization and comparative genomics of chimpanzee endogenous retroviruses

    Retrotransposons, the most abundant and widespread class of eukaryotic transposable elements, are believed to play a significant role in mutation and disease and to have contributed significantly to the evolut...

    Nalini Polavarapu, Nathan J Bowen, John F McDonald in Genome Biology (2006)

  6. Article

    Open Access

    Gene expression profiling supports the hypothesis that human ovarian surface epithelia are multipotent and capable of serving as ovarian cancer initiating cells

    Accumulating evidence suggests that somatic stem cells undergo mutagenic transformation into cancer initiating cells. The serous subtype of ovarian adenocarcinoma in humans has been hypothesized to arise from ...

    Nathan J Bowen, L DeEtte Walker, Lilya V Matyunina, Sanjay Logani in BMC Medical Genomics (2009)

  7. Article

    Open Access

    Characterization and potential functional significance of human-chimpanzee large INDEL variation

    Although humans and chimpanzees have accumulated significant differences in a number of phenotypic traits since diverging from a common ancestor about six million years ago, their genomes are more than 98.5% i...

    Nalini Polavarapu, Gaurav Arora, Vinay K Mittal, John F McDonald in Mobile DNA (2011)

  8. Article

    Open Access

    The effects of MicroRNA transfections on global patterns of gene expression in ovarian cancer cells are functionally coordinated

    MicroRNAs (miRNAs) are a class of small RNAs that have been linked to a number of diseases including cancer. The potential application of miRNAs in the diagnostics and therapeutics of ovarian and other cancers...

    Shubin W Shahab, Lilya V Matyunina, Christopher G Hill, Lijuan Wang in BMC Medical Genomics (2012)

  9. Article

    Open Access

    Integrated sequence and expression analysis of ovarian cancer structural variants underscores the importance of gene fusion regulation

    Genomic rearrangements or structural variants (SVs) are one of the most common classes of mutations in cancer.

    Vinay K. Mittal, John F. McDonald in BMC Medical Genomics (2015)

  10. Article

    Open Access

    De novo assembly and characterization of breast cancer transcriptomes identifies large numbers of novel fusion-gene transcripts of potential functional significance

    Gene-fusion or chimeric transcripts have been implicated in the onset and progression of a variety of cancers. Massively parallel RNA sequencing (RNA-Seq) of the cellular transcriptome is a promising approach ...

    Vinay K. Mittal, John F. McDonald in BMC Medical Genomics (2017)