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  1. Article

    Open Access

    Strong positive selection biases identity-by-descent-based inferences of recent demography and population structure in Plasmodium falciparum

    Malaria genomic surveillance often estimates parasite genetic relatedness using metrics such as Identity-By-Decent (IBD), yet strong positive selection stemming from antimalarial drug resistance or other inter...

    Bing Guo, Victor Borda, Roland Laboulaye, Michele D. Spring in Nature Communications (2024)

  2. Article

    Open Access

    Plasmodium falciparum 7G8 challenge provides conservative prediction of efficacy of PfNF54-based PfSPZ Vaccine in Africa

    Controlled human malaria infection (CHMI) has supported Plasmodium falciparum (Pf) malaria vaccine development by providing preliminary estimates of vaccine efficacy (VE). Because CHMIs generally use Pf strains s...

    Joana C. Silva, Ankit Dwivedi, Kara A. Moser, Mahamadou S. Sissoko in Nature Communications (2022)

  3. Article

    Open Access

    Evaluation of a high-throughput, cost-effective Illumina library preparation kit

    Library preparation for high-throughput sequencing applications is a critical step in producing representative, unbiased sequencing data. The iGenomX Riptide High Throughput Rapid Library Prep Kit purports to ...

    Eric S. Tvedte, Jane Michalski, Shaoji Cheng, Rayanna S. Patkus in Scientific Reports (2021)

  4. Article

    Open Access

    Theileria parasites subvert E2F signaling to stimulate leukocyte proliferation

    Intracellular pathogens have evolved intricate mechanisms to subvert host cell signaling pathways and ensure their own propagation. A lineage of the protozoan parasite genus Theileria infects bovine leukocytes an...

    Kyle Tretina, Malak Haidar, Sally A. Madsen-Bouterse, Takaya Sakura in Scientific Reports (2020)

  5. Article

    Open Access

    Signature of adaptive evolution in olfactory receptor genes in Cory’s Shearwater supports molecular basis for smell in procellariiform seabirds

    Olfactory receptors (ORs), encoded by the largest vertebrate multigene family, enable the detection of thousands of unique odorants in the environment and consequently play a critical role in species survival....

    Mónica C. Silva, Marcus Chibucos, James B. Munro, Sean Daugherty in Scientific Reports (2020)

  6. Article

    Open Access

    A multiplex qPCR approach for detection of pfhrp2 and pfhrp3 gene deletions in multiple strain infections of Plasmodium falciparum

    The rapid and accurate diagnosis of Plasmodium falciparum malaria infection is an essential factor in malaria control. Currently, malaria diagnosis in the field depends heavily on using rapid diagnostic tests (RD...

    Tobias Schindler, Anna C. Deal, Martina Fink, Etienne Guirou in Scientific Reports (2019)

  7. Article

    Open Access

    Genomic structure and diversity of Plasmodium falciparum in Southeast Asia reveal recent parasite migration patterns

    Estimates of Plasmodium falciparum migration may inform strategies for malaria elimination. Here we elucidate fine-scale parasite population structure and infer recent migration across Southeast Asia using identi...

    Amol C. Shetty, Christopher G. Jacob, Fang Huang, Yao Li in Nature Communications (2019)

  8. Article

    Open Access

    Genome-wide diversity and gene expression profiling of Babesia microti isolates identify polymorphic genes that mediate host-pathogen interactions

    Babesia microti, a tick-transmitted, intraerythrocytic protozoan parasite circulating mainly among small mammals, is the primary cause of human babesiosis. While most cases are transmitted by Ixodes ticks, the di...

    Joana C. Silva, Emmanuel Cornillot, Carrie McCracken in Scientific Reports (2016)

  9. Article

    Open Access

    Comparative genomics of the neglected human malaria parasite Plasmodium vivax

    The human malaria parasite Plasmodium vivax is responsible for 25–40% of the ∼515 million annual cases of malaria worldwide. Although seldom fatal, the parasite elicits severe and incapacitating clinical symptoms...

    Jane M. Carlton, John H. Adams, Joana C. Silva, Shelby L. Bidwell, Hernan Lorenzi in Nature (2008)

  10. Article

    Open Access

    Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii

    Species of malaria parasite that infect rodents have long been used as models for malaria disease research. Here we report the whole-genome shotgun sequence of one species, Plasmodium yoelii yoelii, and comparati...

    Jane M. Carlton, Samuel V. Angiuoli, Bernard B. Suh, Taco W. Kooij in Nature (2002)