5 Result(s)
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Article
Open AccessMining the microbiota to identify gut commensals modulating neuroinflammation in a mouse model of multiple sclerosis
The gut microbiome plays an important role in autoimmunity including multiple sclerosis and its mouse model called experimental autoimmune encephalomyelitis (EAE). Prior studies have demonstrated that the mult...
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Article
Metagenomic binning and association of plasmids with bacterial host genomes using DNA methylation
Similar bacterial species and strains in metagenomes are resolved and linked to the plasmids that they harbor using DNA methylation analysis.
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Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing
A systematic evaluation of parameters that affect short amplicons sequenced on Illumina platforms provides guidelines for how to eliminate erroneous reads and improve data interpretation.
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Open AccessLightweight genome viewer: portable software for browsing genomics data in its chromosomal context
Lightweight genome viewer (lwgv) is a web-based tool for visualization of sequence annotations in their chromosomal context. It performs most of the functions of larger genome browsers, while relying on standa...
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Open AccessEGenBio: A Data Management System for Evolutionary Genomics and Biodiversity
Evolutionary genomics requires management and filtering of large numbers of diverse genomic sequences for accurate analysis and inference on evolutionary processes of genomic and functional change. We developed E
