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    Article

    Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking

    GNPS is an open-access community-curated analysis platform for sharing natural product mass spectrometry data that enables continuous, automatic reanalysis of deposited 'living' data sets.

    Mingxun Wang, Jeremy J Carver, Vanessa V Phelan, Laura M Sanchez in Nature Biotechnology (2016)

  2. Article

    Open Access

    Comparative genomics and metabolic profiling of the genus Lysobacter

    Lysobacter species are Gram-negative bacteria widely distributed in soil, plant and freshwater habitats. Lysobacter owes its name to the lytic effects on other microorganisms. To bette...

    Irene de Bruijn, Xu Cheng, Victor de Jager, Ruth Gómez Expósito in BMC Genomics (2015)

  3. Article

    Open Access

    Molecular and chemical dialogues in bacteria-protozoa interactions

    Protozoan predation of bacteria can significantly affect soil microbial community composition and ecosystem functioning. Bacteria possess diverse defense strategies to resist or evade protozoan predation. For ...

    Chunxu Song, Mark Mazzola, Xu Cheng, Janina Oetjen in Scientific Reports (2015)

  4. Article

    Open Access

    Arteriovenous Blood Metabolomics: A Readout of Intra-Tissue Metabostasis

    The human circulatory system consists of arterial blood that delivers nutrients to tissues and venous blood that removes the metabolic by-products. Although it is well established that arterial blood generally...

    Julijana Ivanisevic, Darlene Elias, Hiroshi Deguchi in Scientific Reports (2015)

  5. Article

    Open Access

    Benchmark datasets for 3D MALDI- and DESI-imaging mass spectrometry

    Three-dimensional (3D) imaging mass spectrometry (MS) is an analytical chemistry technique for the 3D molecular analysis of a tissue specimen, entire organ, or microbial colonies on an agar plate. 3D-imaging M...

    Janina Oetjen, Kirill Veselkov, Jeramie Watrous, James S McKenzie in GigaScience (2015)

  6. Article

    Quantitative molecular networking to profile marine cyanobacterial metabolomes

    Untargeted liquid chromatography-MS (LC-MS) is used to rapidly profile crude natural product (NP) extracts; however, the quantity of data produced can become difficult to manage. Molecular networking based on ...

    Jacob R Winnikoff, Evgenia Glukhov, Jeramie Watrous in The Journal of Antibiotics (2014)