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  1. Article

    Open Access

    Monkeypox virus genomic accordion strategies

    The 2023 monkeypox (mpox) epidemic was caused by a subclade IIb descendant of a monkeypox virus (MPXV) lineage traced back to Nigeria in 1971. Person-to-person transmission appears higher than for clade I or s...

    Sara Monzón, Sarai Varona, Anabel Negredo, Santiago Vidal-Freire in Nature Communications (2024)

  2. Article

    Open Access

    Genotypic study of Chlamydia trachomatis for lymphogranuloma venereum diagnosis in rectal specimens from men who have sex with men: a cost-effectiveness analysis

    The significant proportion of asymptomatic patients and the scarcity of genotypic analysis of lymphogranuloma venereum (LGV), mainly among men who have sex with men (MSM), triggers a high incidence of underdia...

    David Sánchez, Josep Ferrer, Estela Giménez, Ignacio Torres in BMC Infectious Diseases (2024)

  3. Article

    Open Access

    SARS-CoV-2-reactive IFN-γ-producing CD4+ and CD8+ T cells in blood do not correlate with clinical severity in unvaccinated critically ill COVID-19 patients

    We examined the relationship between peripheral blood levels of SARS-CoV-2 S (Spike protein)1/M (Membrane protein)-reactive IFN-γ-producing CD4+ and CD8+ T cells, serum levels of biomarkers of clinical severity, ...

    Beatriz Olea, Eliseo Albert, Estela Giménez, Ignacio Torres in Scientific Reports (2022)

  4. Article

    Open Access

    Combined kinetic analysis of SARS-CoV-2 RNAemia, N-antigenemia and virus-specific antibodies in critically ill adult COVID-19 patients

    Combined kinetic analysis of plasma SARS-CoV-2 RNAemia, Nucleocapsid (N)-antigenemia and virus-specific antibodies may help ascertain the role of antibodies in preventing virus dissemination in COVID-19 patien...

    Rosa Costa, Juan Alberola, Beatriz Olea, Roberto Gozalbo-Rovira in Scientific Reports (2022)

  5. Article

    Performance comparison of a flow cytometry immunoassay for intracellular cytokine staining and the QuantiFERON® SARS-CoV-2 test for detection and quantification of SARS-CoV-2-Spike-reactive-IFN-γ-producing T cells after COVID-19 vaccination

    We compared the performance of an in-house-developed flow cytometry assay for intracellular cytokine staining (FC-ICS) and a commercially-available cytokine release assay (the QuantiFERON® SARS-CoV-2 Test [QF]...

    Nuria Tormo, Estela Giménez in European Journal of Clinical Microbiology … (2022)

  6. Article

    Open Access

    Neutralizing antibodies against SARS-CoV-2 variants of concern elicited by the comirnaty COVID-19 vaccine in nursing home residents

    Immunosenescence may impact the functionality and breadth of vaccine-elicited humoral immune responses. The ability of sera to neutralize the SARS-CoV-2 spike protein (S) from Beta, Gamma, Delta, and Epsilon v...

    Beatriz Sánchez-Sendra, Eliseo Albert, Joao Zulaica, Ignacio Torres in Scientific Reports (2022)

  7. Article

    Open Access

    Multi-body-site colonization screening cultures for predicting multi-drug resistant Gram-negative and Gram-positive bacteremia in hematological patients

    To investigate the multi-drug resistant bacteria (MDRB) colonization rate in hematological patients hospitalized for any cause using a multi-body-site surveillance approach, and determine the extent to which t...

    Ignacio Torres, Dixie Huntley, Mar Tormo, Marisa Calabuig in BMC Infectious Diseases (2022)

  8. Article

    Open Access

    Performance of a flow cytometry-based immunoassay for detection of antibodies binding to SARS-CoV-2 spike protein

    The performance of a laboratory-developed IgG/IgA flow cytometry-based immunoassay (FCI) using Jurkat T cells stably expressing full-length native S protein was compared against Elecsys electrochemiluminiscent...

    Arantxa Valdivia, Fabián Tarín, María Jesús Alcaraz, Paula Piñero in Scientific Reports (2022)

  9. Article

    The first wave of the COVID-19 epidemic in Spain was associated with early introductions and fast spread of a dominating genetic variant

    The coronavirus disease 2019 (COVID-19) pandemic has affected the world radically since 2020. Spain was one of the European countries with the highest incidence during the first wave. As a part of a consortium...

    Mariana G. López, Álvaro Chiner-Oms, Darío García de Viedma in Nature Genetics (2021)

  10. No Access

    Article

    Performance of a MALDI-TOF mass spectrometry-based method for rapid detection of third-generation oxymino-cephalosporin-resistant Escherichia coli and Klebsiella spp. from blood cultures

    We optimized and prospectively evaluated a simple MALDI-TOF MS-based method for direct detection of third-generation oxymino-cephalosporin resistance (3rd CephR) in Escherichia coli and Klebsiella spp. from blood...

    Ignacio Torres, Eliseo Albert in European Journal of Clinical Microbiology … (2021)

  11. Article

    Inference of SARS-CoV-2 spike-binding neutralizing antibody titers in sera from hospitalized COVID-19 patients by using commercial enzyme and chemiluminescent immunoassays

    Whether antibody levels measured by commercially available enzyme or chemiluminescent immunoassays targeting the SARS-CoV-2 spike (S) protein can act as a proxy for serum neutralizing activity remains to be es...

    Arantxa Valdivia, Ignacio Torres in European Journal of Clinical Microbiology … (2021)

  12. No Access

    Article

    Vancomycin MICs and risk of complicated bacteremia by glycopeptide-susceptible Staphylococcus aureus

    Vancomycin (VAN) minimum inhibitory concentrations (MICs) at the upper end of the susceptible range for Staphylococcus aureus (S. aureus), as measured by the Etest method, have been associated with poor clinical ...

    Rocío Falcón, Eva Mateo, Rosa Oltra in European Journal of Clinical Microbiology … (2019)

  13. No Access

    Article

    Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF-MS) proteomic profiling of cerebrospinal fluid in the diagnosis of enteroviral meningitis: a proof-of-principle study

    The use of matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF-MS) for diagnosing viral infections by directly testing clinical specimens has not previously been explored. I...

    Ignacio Torres, Estela Giménez in European Journal of Clinical Microbiology … (2018)

  14. No Access

    Chapter

    Evolutionary Ethnobotanical Studies of Incipient Domestication of Plants in Mesoamerica

    Human cultures that occupied the area currently known as Mesoamerica developed a broad repertory of technologies for managing the biotic resources and ecosystems of the surrounding areas they lived. These tech...

    Alejandro Casas Ph.D., José Blancas Ph.D., Adriana Otero-Arnaiz in Ethnobotany of Mexico (2016)

  15. Article

    Open Access

    TEK, local perceptions of risk, and diversity of management practices of Agave inaequidens in Michoacán, Mexico

    Mescal production is the main economic activity associated to agaves in Mexico, which involves 53 species mostly harvested from forests. The increasing mescal demand has influenced risk in both agave populatio...

    Ignacio Torres, José Blancas, Alejandro León in Journal of Ethnobiology and Ethnomedicine (2015)

  16. No Access

    Article

    Population Dynamics and Sustainable Management of Mescal Agaves in Central Mexico: Agave potatorum in the Tehuacán-Cuicatlán Valley

    Population Dynamics and Sustainable Management of Mescal Agaves in Central Mexico: Agave potatorum in the Tehuacán-Cuicatlán Valley. A total of 37 agave species ar...

    Ignacio Torres, Alejandro Casas, Ernesto Vega, Miguel Martínez-Ramos in Economic Botany (2015)

  17. Article

    Open Access

    Vulnerability and risk management of Agave species in the Tehuacán Valley, México

    Our study analysed the vulnerability of the useful Agave species of the Tehuacán Valley, Mexico, considering ecological, cultural and economic aspects, and management types. We hypothesized that management intens...

    América Delgado-Lemus, Ignacio Torres in Journal of Ethnobiology and Ethnomedicine (2014)

  18. Article

    Open Access

    Influence of traditional markets on plant management in the Tehuacán Valley

    The Tehuacán Valley, Mexico is a region with exceptionally high biocultural richness. Traditional knowledge in this region comprises information on nearly 1,600 plant species used by local peoples to satisfy t...

    Yaayé Arellanes, Alejandro Casas in Journal of Ethnobiology and Ethnomedicine (2013)

  19. No Access

    Article

    Plant Management in the Tehuacán-Cuicatlán Valley, Mexico1

    Plant Management in the Tehuacán-Cuicatlán Valley, Mexico. Plant management types currently practiced in the Tehuacán-Cuicatlán Valley, México, were documented and analyzed based on ethnobotanical studies conduct...

    José Blancas, Alejandro Casas, Selene Rangel-Landa, Ana Moreno-Calles in Economic Botany (2010)

  20. No Access

    Article

    Traditional Knowledge and Useful Plant Richness in the Tehuacán–Cuicatlán Valley, Mexico

    Traditional Knowledge and Useful Plant Richness in the Tehuacán–Cuicatlán Valley, Mexico. This study systematizes ethnobotanical information about the interactions between people and plan...

    Rafael Lira, Alejandro Casas, Rocío Rosas-López, Martín Paredes-Flores in Economic Botany (2009)