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  1. Article

    Open Access

    hoxc12/c13 as key regulators for rebooting the developmental program in Xenopus limb regeneration

    During organ regeneration, after the initial responses to injury, gene expression patterns similar to those in normal development are reestablished during subsequent morphogenesis phases. This supports the ide...

    Aiko Kawasumi-Kita, Sang-Woo Lee, Daisuke Ohtsuka, Kaori Niimi in Nature Communications (2024)

  2. Article

    Open Access

    Identification of tumor-related genes via RNA sequencing of tumor tissues in Xenopus tropicalis

    Cancer treatment is still challenging because the disease is often caused by multiple mutations. Although genomic studies have identified many oncogenes and tumor suppressor genes, gene sets involved in tumori...

    Kazuki Kitamura, Takayoshi Yamamoto, Haruki Ochi, Makoto Suzuki in Scientific Reports (2023)

  3. Article

    Open Access

    Air–breathing behavior underlies the cell death in limbs of Rana pirica tadpoles

    Amphibians shape their limbs by differential outgrowth of digits and interdigital regions. In contrast, amniotes employ cell death, an additional developmental system, to determine the final shape of limbs. Pr...

    Satomi F. Ono, Ingrid Rosenburg Cordeiro, Osamu Kishida, Haruki Ochi in Zoological Letters (2023)

  4. Article

    Open Access

    Comparative analysis demonstrates cell type-specific conservation of SOX9 targets between mouse and chicken

    SRY (sex-determining region Y)-box 9 (SOX9) is a transcription factor regulating both chondrogenesis and sex determination. Among vertebrates, SOX9’s functions in chondrogenesis are well conserved, while they ...

    Satoshi Yamashita, Kensuke Kataoka, Hiroto Yamamoto, Tomoko Kato in Scientific Reports (2019)

  5. No Access

    Article

    A Tanganyikan cichlid Neolamprologus mustax selectively exploits territories of another cichlid Variabilichromis moorii due to its inter-individual variation in aggression

    Animals in a population consistently differ from one another in behavioural types over time and this difference can affect intra- and interspecific relationships. However, empirical studies about roles of beha...

    Haruki Ochi, Satoshi Awata, Hiroki Hata, Masanori Kohda in Hydrobiologia (2017)

  6. Article

    Open Access

    Genome evolution in the allotetraploid frog Xenopus laevis

    To explore the origins and consequences of tetraploidy in the African clawed frog, we sequenced the Xenopus laevis genome and compared it to the related diploid X. tropicalis genome. We characterize the allotetra...

    Adam M. Session, Yoshinobu Uno, Taejoon Kwon, Jarrod A. Chapman, Atsushi Toyoda in Nature (2016)

  7. Article

    Open Access

    Six1 is a key regulator of the developmental and evolutionary architecture of sensory neurons in craniates

    Various senses and sensory nerve architectures of animals have evolved during adaptation to exploit diverse environments. In craniates, the trunk sensory system has evolved from simple mechanosensory neurons i...

    Hiroshi Yajima, Makoto Suzuki, Haruki Ochi, Keiko Ikeda, Shigeru Sato in BMC Biology (2014)

  8. No Access

    Chapter

    Differential Use of Paralogous Genes via Evolution of Cis-Regulatory Elements for Divergent Expression Specificities

    Recent accumulation of genome sequences indicates that vertebrate genomes retained many duplicate genes, called paralogues, after whole-genome duplications (WGDs) occurring in the early stages of chordate evol...

    Haruki Ochi, Akane Kawaguchi, Hajime Ogino in New Principles in Developmental Processes (2014)

  9. Article

    Open Access

    Evolution of a tissue-specific silencer underlies divergence in the expression of pax2 and pax8 paralogues

    Recent studies underscore a role for the differential degeneration of enhancers in the evolutionary diversification of paralogue expression. However, no one has reported evidence for the involvement of innovat...

    Haruki Ochi, Tomoko Tamai, Hiroki Nagano, Akane Kawaguchi in Nature Communications (2012)

  10. No Access

    Protocol

    Comparative Genomics-Based Identification and Analysis of Cis-Regulatory Elements

    Identification of cis-regulatory elements, such as enhancers and promoters, is very important not only for analysis of gene regulatory networks but also as a tool for targeted gene expression experiments. In t...

    Hajime Ogino, Haruki Ochi, Chihiro Uchiyama, Sarah Louie in Xenopus Protocols (2012)

  11. No Access

    Article

    Increased energy investment in testes following territory acquisition in a maternal mouthbrooding cichlid

    Underwater observations conducted in Lake Tanganyika showed that males of a maternal mouthbrooding cichlid, Petrochromis fasciolatus, defended a mating territory for at least several months, but left at approxima...

    Haruki Ochi, Tomohiro Takeyama, Yasunobu Yanagisawa in Ichthyological Research (2009)

  12. Article

    Open Access

    Lbx2regulates formation of myofibrils

    Skeletal muscle differentiation requires assembly of contractile proteins into organized myofibrils. The Drosophila ladybird homeobox gene (lad) functions in founder cells of the segmental border muscle to promot...

    Haruki Ochi, Monte Westerfield in BMC Developmental Biology (2009)

  13. No Access

    Article

    Farming-out of offspring is a predominantly male tactics in a biparental mouthbrooding cichlid Perrisodus mircolepis

    Intraspecific brood-mixing of a Tanganyikan biparental cichlid fish Perissodus microlepis has been attributed to farming-out, a behaviour in which a parent transport some or all of their free-swimming young in th...

    Haruki Ochi, Yasunobu Yanagisawa in Environmental Biology of Fishes (2005)

  14. No Access

    Article

    Paternal mouthbrooding bagrid catfishes in Lake Tanganyika

     This article gives the first information about paternal mouthbrooding in bagrid catfishes, based on analysis of specimens collected while SCUBA diving in Lake Tanganyika, Africa. Lophiobagrus aquilus and L. cycl...

    Haruki Ochi, Andrew Rossiter, Yasunobu Yanagisawa in Ichthyological Research (2002)

  15. No Access

    Article

    Biparental mouthbrooding of the catfish Phyllonemus filinemus in Lake Tanganyika

    This article reports biparental mouthbrooding of the bagrid catfish Phyllonemus filinemus in Lake Tanganyika, based on analysis of specimens collected during SCUBA diving. This catfish was nocturnally active, an...

    Haruki Ochi, Andrew Rossiter, Yasunobu Yanagisawa in Ichthyological Research (2001)

  16. No Access

    Article

    Sand-transfer behavior outside the nest by guarding parents of the Tanganyikan cichlid,Neolamprologus caudopunctatus

    Haruki Ochi, Yasunobu Yanagisawa in Ichthyological Research (1999)

  17. No Access

    Article

    Intra-buccal feeding of young in an undescribed Tanganyikan cichlid Microdontochromis sp.

    The zooplanktivorous cichlid Microdontochromis sp. formed large stationary schools in midwater consisting of mouthbrooding and nonbrooding individuals. Early young smaller than 6.0 mm in standard length were mout...

    Yasunobu Yanagisawa, Haruki Ochi, Andrew Rossiter in Environmental Biology of Fishes (1996)

  18. No Access

    Article

    Mating systems of two midwater-spawning cichlids,Cyprichromis microlepidotus andParacyprichromis brieni, in Lake Tanganyika

    The breeding habits of 2 maternal mouthbrooding cichlids,Cyprichromis microlepidotus andParacyprichromis brieni, were investigated in Lake Tanganyika. Although spawning on the substrate in the male's mating terri...

    Haruki Ochi in Ichthyological Research (1996)

  19. No Access

    Article

    Geographical colour variation in cichlid fishes at the southern end of Lake Tanganyika

    Geographical colour variation and distribution of 48 common cichlid fish species were studied at 20 sites along an 85 km shoreline at the southern end of Lake Tanganyika, Africa. Sixteen species had two or mor...

    Masanori Kohda, Yasunobu Yanagisawa, Tetsu Sato in Environmental Biology of Fishes (1996)

  20. No Access

    Article

    Interspecific brood-mixing in Tanganyikan cichlids

    We collected schools of young, guarded by parents, of six common cichlid species to investigate the frequency and origin of interspecific brood-mixing. The main host species were a piscivore Lepidiolamprologus el...

    Haruki Ochi, Yasunobu Yanagisawa in Environmental Biology of Fishes (1996)

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