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  1. Article

    Open Access

    Sampling time-dependent artifacts in single-cell genomics studies

    Robust protocols and automation now enable large-scale single-cell RNA and ATAC sequencing experiments and their application on biobank and clinical cohorts. However, technical biases introduced during sample ...

    Ramon Massoni-Badosa, Giovanni Iacono, Catia Moutinho, Marta Kulis in Genome Biology (2020)

  2. Article

    Open Access

    IL-4 orchestrates STAT6-mediated DNA demethylation leading to dendritic cell differentiation

    The role of cytokines in establishing specific transcriptional programmes in innate immune cells has long been recognized. However, little is known about how these extracellular factors instruct innate immune ...

    Roser Vento-Tormo, Carlos Company, Javier Rodríguez-Ubreva in Genome Biology (2016)

  3. Article

    Open Access

    NF-κB-direct activation of microRNAs with repressive effects on monocyte-specific genes is critical for osteoclast differentiation

    Monocyte-to-osteoclast conversion is a unique terminal differentiation process that is exacerbated in rheumatoid arthritis and bone metastasis. The mechanisms implicated in upregulating osteoclast-specific gen...

    Lorenzo de la Rica, Antonio García-Gómez, Natalia R Comet in Genome Biology (2015)

  4. Article

    Open Access

    PU.1 target genes undergo Tet2-coupled demethylation and DNMT3b-mediated methylation in monocyte-to-osteoclast differentiation

    DNA methylation is a key epigenetic mechanism for driving and stabilizing cell-fate decisions. Local deposition and removal of DNA methylation are tightly coupled with transcription factor binding, although th...

    Lorenzo de la Rica, Javier Rodríguez-Ubreva, Mireia García in Genome Biology (2013)

  5. Article

    Open Access

    The B cell transcription program mediates hypomethylation and overexpression of key genes in Epstein-Barr virus-associated proliferative conversion

    Epstein-Barr virus (EBV) infection is a well characterized etiopathogenic factor for a variety of immune-related conditions, including lymphomas, lymphoproliferative disorders and autoimmune diseases. EBV-medi...

    Henar Hernando, Claire Shannon-Lowe, Abul B Islam, Fatima Al-Shahrour in Genome Biology (2013)