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  1. Article

    Open Access

    Tick hemocytes have a pleiotropic role in microbial infection and arthropod fitness

    Uncovering the complexity of systems in non-model organisms is critical for understanding arthropod immunology. Prior efforts have mostly focused on Dipteran insects, which only account for a subset of existin...

    Agustin Rolandelli, Hanna J. Laukaitis-Yousey, Haikel N. Bogale in Nature Communications (2024)

  2. Article

    Open Access

    Gene expression analyses reveal differences in children’s response to malaria according to their age

    In Bandiagara, Mali, children experience on average two clinical malaria episodes per year. However, even in the same transmission area, the number of uncomplicated symptomatic infections, and their parasitemi...

    Kieran Tebben, Salif Yirampo, Drissa Coulibaly, Abdoulaye K. Koné in Nature Communications (2024)

  3. Article

    Open Access

    STRIDE: a command-line HMM-based identifier and sub-classifier of Plasmodium falciparum RIFIN and STEVOR variant surface antigen families

    RIFINs and STEVORs are variant surface antigens expressed by P. falciparum that play roles in severe malaria pathogenesis and immune evasion. These two highly diverse multigene families feature multiple paralogs,...

    Albert E. Zhou, Zalak V. Shah, Katie R. Bradwell, James B. Munro in BMC Bioinformatics (2022)

  4. Article

    Open Access

    Relative contributions of various endogenous and exogenous factors to the mosquito microbiota

    The commensal microbiota of mosquitoes impacts their development, immunity, and competency, and could provide a target for alternative entomological control approaches. However, despite the importance of the m...

    Haikel N. Bogale, Matthew V. Cannon, Kalil Keita, Denka Camara in Parasites & Vectors (2020)

  5. Article

    Open Access

    Optimization of parasite DNA enrichment approaches to generate whole genome sequencing data for Plasmodium falciparum from low parasitaemia samples

    Owing to the large amount of host DNA in clinical samples, generation of high-quality Plasmodium falciparum whole genome sequencing (WGS) data requires enrichment for parasite DNA. Enrichment is often achieved by...

    Zalak Shah, Matthew Adams, Kara A. Moser, Biraj Shrestha in Malaria Journal (2020)

  6. Article

    Open Access

    Plasmodium vivax chloroquine resistance links to pvcrt transcription in a genetic cross

    Mainstay treatment for Plasmodium vivax malaria has long relied on chloroquine (CQ) against blood-stage parasites plus primaquine against dormant liver-stage forms (hypnozoites), however drug resistance confronts...

    Juliana M. Sá, Sarah R. Kaslow, Roberto R. Moraes Barros in Nature Communications (2019)

  7. Article

    Open Access

    Plasmodium vivax transcriptomes reveal stage-specific chloroquine response and differential regulation of male and female gametocytes

    Studies of Plasmodium vivax gene expression are complicated by the lack of in vitro culture system and the difficulties associated with studying clinical infections that often contain multiple clones and a mixtur...

    Adam Kim, Jean Popovici, Didier Menard, David Serre in Nature Communications (2019)

  8. Article

    Open Access

    A high-throughput sequencing assay to comprehensively detect and characterize unicellular eukaryotes and helminths from biological and environmental samples

    Several of the most devastating human diseases are caused by eukaryotic parasites transmitted by arthropod vectors or through food and water contamination. These pathogens only represent a fraction of all unic...

    Matthew V. Cannon, Haikel Bogale, Lindsay Rutt, Michael Humphrys in Microbiome (2018)

  9. Article

    Open Access

    Factors sha** the gut bacterial community assembly in two main Colombian malaria vectors

    The understanding of the roles of gut bacteria in the fitness and vectorial capacity of mosquitoes that transmit malaria, is improving; however, the factors sha** the composition and structure of such bacter...

    Priscila Bascuñán, Juan Pablo Niño-Garcia, Yadira Galeano-Castañeda in Microbiome (2018)

  10. Article

    Open Access

    Characterization of P. vivax blood stage transcriptomes from field isolates reveals similarities among infections and complex gene isoforms

    Our understanding of the structure and regulation of Plasmodium vivax genes is limited by our inability to grow the parasites in long-term in vitro cultures. Most P. vivax studies must therefore rely on patient s...

    Adam Kim, Jean Popovici, Amélie Vantaux, Reingsey Samreth in Scientific Reports (2017)

  11. Article

    Open Access

    Genomic analyses of complex P. vivax infections

    Ernest Chan, Didier Menard, John Barnwell, Peter Zimmerman, David Serre in Malaria Journal (2014)

  12. Article

    Open Access

    Mitochondrial genome sequences reveal deep divergences among Anopheles punctulatus sibling species in Papua New Guinea

    Members of the Anopheles punctulatus group (AP group) are the primary vectors of human malaria in Papua New Guinea. The AP group includes 13 sibling species, most of them morphologically indistinguishable. Unders...

    Kyle Logue, Ernest R Chan, Tenisha Phipps, Scott T Small, Lisa Reimer in Malaria Journal (2013)

  13. Article

    Erratum: Genetic variant near IRS1 is associated with type 2 diabetes, insulin resistance and hyperinsulinemia

    Nat. Genet. 41, 1110–1115; published online 6 September; corrected online 13 September 2009 In the version of this article initially published online, there were errors in the e-mail addresses of two of the co...

    Johan Rung, Stéphane Cauchi, Anders Albrechtsen, Lishuang Shen in Nature Genetics (2009)

  14. No Access

    Article

    Genetic variant near IRS1 is associated with type 2 diabetes, insulin resistance and hyperinsulinemia

    Rob Sladek and colleagues identify a common variant near the insulin receptor substrate 1 gene (IRS1) associated with type 2 diabetes, insulin resistance, hyperinsulinemia and impaired insulin signaling. This is ...

    Johan Rung, Stéphane Cauchi, Anders Albrechtsen, Lishuang Shen in Nature Genetics (2009)

  15. No Access

    Article

    A genome-wide approach to identifying novel-imprinted genes

    Genomic imprinting is an epigenetic process in which the copy of a gene inherited from one parent (maternal or paternal) is consistently silenced or expressed at a significantly lower level than the copy from ...

    Katherine S. Pollard, David Serre, Xu Wang, Heng Tao, Elin Grundberg in Human Genetics (2008)

  16. No Access

    Article

    Neanderthals in central Asia and Siberia

    The classic frame of the Neanderthals — stocky, long-headed, with distinctive features of the skull — began to emerge around 400,000 years ago, and disappeared from hominins around 30,000 years ago. However, d...

    Johannes Krause, Ludovic Orlando, David Serre, Bence Viola, Kay Prüfer in Nature (2007)

  17. No Access

    Article

    A genome-wide association study identifies novel risk loci for type 2 diabetes

    Type 2 diabetes mellitus results from the interaction of environmental factors with a combination of genetic variants, most of which were hitherto unknown. A systematic search for these variants was recently m...

    Robert Sladek, Ghislain Rocheleau, Johan Rung, Christian Dina, Lishuang Shen in Nature (2007)

  18. No Access

    Chapter

    No Evidence of Neandertal mtDNA Contribution to Early Modern Humans

    David Serre, André Langaney, Mario Chech in Early Modern Humans at the Moravian Gate (2006)

  19. No Access

    Article

    Ancient DNA

  20. DNA-sequence information can, in principle, be retrieved from archaeological and palaeontological remains that are less than ∼100,000 years old.

    ...
  21. Michael Hofreiter, David Serre, Hendrik N. Poinar, Melanie Kuch in Nature Reviews Genetics (2001)