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  1. Article

    Author Correction: New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries

    Nick Shrine, Anna L. Guyatt, A. Mesut Erzurumluoglu, Victoria E. Jackson in Nature Genetics (2024)

  2. Article

    Open Access

    Collagen type XIV is proportionally lower in the lung tissue of patients with IPF

    Abnormal deposition of extracellular matrix (ECM) in lung tissue is a characteristic of idiopathic pulmonary fibrosis (IPF). Increased collagen deposition is also accompanied by altered collagen organization. ...

    Mehmet Nizamoglu, Maunick Lefin Koloko Ngassie, Rhode A. Meuleman in Scientific Reports (2023)

  3. Article

    Open Access

    Smoking increases expression of the SARS-CoV-2 spike protein-binding long ACE2 isoform in bronchial epithelium

    After more than two years the COVID-19 pandemic, that is caused by infection with the respiratory SARS-CoV-2 virus, is still ongoing. The risk to develop severe COVID-19 upon SARS-CoV-2 infection is increased ...

    Simon D. Pouwels, Maarten van den Berge, Gwenda F. Vasse in Respiratory Research (2023)

  4. Article

    Open Access

    High miR203a-3p and miR-375 expression in the airways of smokers with and without COPD

    Smoking is a leading cause of chronic obstructive pulmonary disease (COPD). It is known to have a significant impact on gene expression and (inflammatory) cell populations in the airways involved in COPD patho...

    Jos van Nijnatten, Corry-Anke Brandsma, Katrina Steiling in Scientific Reports (2022)

  5. Article

    Open Access

    Identifying a nasal gene expression signature associated with hyperinflation and treatment response in severe COPD

    Hyperinflation contributes to dyspnea intensity in COPD. Little is known about the molecular mechanisms underlying hyperinflation and how inhaled corticosteroids (ICS) affect this important aspect of COPD path...

    Alen Faiz, Kai Imkamp, Erica van der Wiel, Ilse M. Boudewijn in Scientific Reports (2020)

  6. Article

    Open Access

    Genetic regulation of gene expression of MIF family members in lung tissue

    Macrophage migration inhibitory factor (MIF) is a cytokine found to be associated with chronic obstructive pulmonary disease (COPD). However, there is no consensus on how MIF levels differ in COPD compared to ...

    Laura Florez-Sampedro, Corry-Anke Brandsma, Maaike de Vries in Scientific Reports (2020)

  7. Article

    Open Access

    Epithelial-interleukin-1 inhibits collagen formation by airway fibroblasts: Implications for asthma

    In asthma, the airway epithelium has an impaired capacity to differentiate and plays a key role in the development of airway inflammation and remodeling through mediator release. The study objective was to inv...

    Emmanuel T. Osei, Leila B. Mostaço-Guidolin, Aileen Hsieh in Scientific Reports (2020)

  8. No Access

    Article

    A cellular census of human lungs identifies novel cell states in health and in asthma

    Human lungs enable efficient gas exchange and form an interface with the environment, which depends on mucosal immunity for protection against infectious agents. Tightly controlled interactions between structu...

    Felipe A. Vieira Braga, Gozde Kar, Marijn Berg, Orestes A. Carpaij in Nature Medicine (2019)

  9. Article

    Author Correction: New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries

    An amendment to this paper has been published and can be accessed via a link at the top of the paper

    Nick Shrine, Anna L. Guyatt, A. Mesut Erzurumluoglu, Victoria E. Jackson in Nature Genetics (2019)

  10. Article

    Open Access

    Limited overlap in significant hits between genome-wide association studies on two airflow obstruction definitions in the same population

    Airflow obstruction is a hallmark of chronic obstructive pulmonary disease (COPD), and is defined as either the ratio between forced expiratory volume in one second and forced vital capacity (FEV1/FVC) < 70% or <...

    Diana A. van der Plaat, Judith M. Vonk, Lies Lahousse in BMC Pulmonary Medicine (2019)

  11. No Access

    Article

    New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries

    Reduced lung function predicts mortality and is key to the diagnosis of chronic obstructive pulmonary disease (COPD). In a genome-wide association study in 400,102 individuals of European ancestry, we define 2...

    Nick Shrine, Anna L. Guyatt, A. Mesut Erzurumluoglu, Victoria E. Jackson in Nature Genetics (2019)

  12. No Access

    Chapter

    Dynamic Reciprocity: The Role of the Extracellular Matrix Microenvironment in Amplifying and Sustaining Pathological Lung Fibrosis

    When taken together fibrotic lung diseases are the leading cause of mortality worldwide, but our understanding of the underlying mechanisms driving these processes is limited. The lung consists of defined part...

    Janette K. Burgess, Kirsten Muizer, Corry-Anke Brandsma in Fibrosis in Disease (2019)

  13. Article

    Open Access

    From blood to lung tissue: effect of cigarette smoke on DNA methylation and lung function

    Genetic and environmental factors play a role in the development of COPD. The epigenome, and more specifically DNA methylation, is recognized as important link between these factors. We postulate that DNA meth...

    Maaike de Vries, Diana A van der Plaat, Ivana Nedeljkovic in Respiratory Research (2018)

  14. Article

    Open Access

    The Overlap of Lung Tissue Transcriptome of Smoke Exposed Mice with Human Smoking and COPD

    Genome-wide mRNA profiling in lung tissue from human and animal models can provide novel insights into the pathogenesis of chronic obstructive pulmonary disease (COPD). While 6 months of smoke exposure are wid...

    Ma’en Obeidat, Anna Dvorkin-Gheva, Xuan Li, Yohan Bossé in Scientific Reports (2018)

  15. Article

    Open Access

    Altered DNA methylation is associated with aberrant gene expression in parenchymal but not airway fibroblasts isolated from individuals with COPD

    Chronic obstructive pulmonary disease (COPD) is a heterogeneous disease of the lungs that is currently the fourth leading cause of death worldwide. Genetic factors account for only a small amount of COPD risk,...

    Rachel L. Clifford, Nick Fishbane, Jamie Patel, Julia L. MacIsaac in Clinical Epigenetics (2018)

  16. Article

    Open Access

    Nasal gene expression differentiates COPD from controls and overlaps bronchial gene expression

    Nasal gene expression profiling is a promising method to characterize COPD non-invasively. We aimed to identify a nasal gene expression profile to distinguish COPD patients from healthy controls. We investigat...

    Ilse M. Boudewijn, Alen Faiz, Katrina Steiling, Erica van der Wiel in Respiratory Research (2017)

  17. Article

    Open Access

    A Potent Tartrate Resistant Acid Phosphatase Inhibitor to Study the Function of TRAP in Alveolar Macrophages

    The enzyme tartrate resistant acid phosphatase (TRAP, two isoforms 5a and 5b) is highly expressed in alveolar macrophages, but its function there is unclear and potent selective inhibitors of TRAP are required...

    Carian E. Boorsma, T. Anienke van der Veen, Kurnia S. S. Putri in Scientific Reports (2017)

  18. Article

    Open Access

    Sulfatase modifying factor 1 (SUMF1) is associated with Chronic Obstructive Pulmonary Disease

    It has been observed that mice lacking the sulfatase modifying factor (Sumf1) developed an emphysema-like phenotype. However, it is unknown if SUMF1 may play a role in Chronic Obstructive Pulmonary Disease (COPD)...

    Julie Weidner, Linnea Jarenbäck, Kim de Jong, Judith M. Vonk in Respiratory Research (2017)

  19. No Access

    Article

    Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets

    Louise Wain, Ian Hall, Martin Tobin and colleagues report genome-wide association analyses of lung function, identifying 43 new signals associated with one or more lung function traits. A genetic risk score de...

    Louise V Wain, Nick Shrine, María Soler Artigas, A Mesut Erzurumluoglu in Nature Genetics (2017)

  20. No Access

    Chapter

    Proteogenomics: Key Driver for Clinical Discovery and Personalized Medicine

    Proteogenomics is a multi-omics research field that has the aim to efficiently integrate genomics, transcriptomics and proteomics. With this approach it is possible to identify new patient-specific proteoforms...

    Ruggero Barbieri, Victor Guryev, Corry-Anke Brandsma, Frank Suits in Proteogenomics (2016)

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