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A tool kit for quantifying eukaryotic rRNA gene sequences from human microbiome samples

Eukaryotic microorganisms are important but understudied components of the human microbiome. Here we present a pipeline for analysis of deep sequencing data on single cell eukaryotes. We designed a new 18S rRN...

Serena Dollive, Gregory L Peterfreund, Scott Sherrill-Mix, Kyle Bittinger… in Genome Biology (2012)