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  1. Article

    Open Access

    T-RHEX-RNAseq – a tagmentation-based, rRNA blocked, random hexamer primed RNAseq method for generating stranded RNAseq libraries directly from very low numbers of lysed cells

    RNA sequencing has become the mainstay for studies of gene expression. Still, analysis of rare cells with random hexamer priming – to allow analysis of a broader range of transcripts – remains challenging.

    Charlotte Gustafsson, Julia Hauenstein, Nicolai Frengen, Aleksandra Krstic in BMC Genomics (2023)

  2. Article

    Open Access

    Activation of neuronal genes via LINE-1 elements upon global DNA demethylation in human neural progenitors

    DNA methylation contributes to the maintenance of genomic integrity in somatic cells, in part through the silencing of transposable elements. In this study, we use CRISPR-Cas9 technology to delete DNMT1, the DNA ...

    Marie E Jönsson, Per Ludvik Brattås, Charlotte Gustafsson in Nature Communications (2019)

  3. Article

    Open Access

    High-throughput ChIPmentation: freely scalable, single day ChIPseq data generation from very low cell-numbers

    Chromatin immunoprecipitation coupled to sequencing (ChIP-seq) is widely used to map histone modifications and transcription factor binding on a genome-wide level.

    Charlotte Gustafsson, Ayla De Paepe, Christian Schmidl, Robert Månsson in BMC Genomics (2019)