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  1. Article

    Open Access

    A guided network estimation approach using multi-omic information

    In systems biology, an organism is viewed as a system of interconnected molecular entities. To understand the functioning of organisms it is essential to integrate information about the variations in the conce...

    Georgios Bartzis, Carel F. W. Peeters, Wilco Ligterink in BMC Bioinformatics (2024)

  2. Article

    Open Access

    CSF proteome profiling reveals biomarkers to discriminate dementia with Lewy bodies from Alzheimer´s disease

    Diagnosis of dementia with Lewy bodies (DLB) is challenging and specific biofluid biomarkers are highly needed. We employed proximity extension-based assays to measure 665 proteins in the cerebrospinal fluid (...

    Marta del Campo, Lisa Vermunt, Carel F. W. Peeters, Anne Sieben in Nature Communications (2023)

  3. No Access

    Article

    CSF proteome profiling across the Alzheimer’s disease spectrum reflects the multifactorial nature of the disease and identifies specific biomarker panels

    Development of disease-modifying therapies against Alzheimer’s disease (AD) requires biomarkers reflecting the diverse pathological pathways specific for AD. We measured 665 proteins in 797 cerebrospinal fluid...

    Marta del Campo, Carel F. W. Peeters, Erik C. B. Johnson, Lisa Vermunt in Nature Aging (2022)

  4. Article

    Open Access

    psBLUP: incorporating marker proximity for improving genomic prediction accuracy

    Genomic selection entails the estimation of phenotypic traits of interest for plants without phenotype based on the association between single-nucleotide polymorphisms (SNPs) and phenotypic traits for plants w...

    Georgios Bartzis, Carel F. W. Peeters, Fred van Eeuwijk in Euphytica (2022)

  5. Article

    Open Access

    Symptom clusters among cancer survivors: what can machine learning techniques tell us?

    Knowledge regarding symptom clusters may inform targeted interventions. The current study investigated symptom clusters among cancer survivors, using machine learning techniques on a large data set.

    Koen I. Neijenhuijs, Carel F. W. Peeters in BMC Medical Research Methodology (2021)

  6. Article

    Open Access

    Multiparametric functional MRI and 18F-FDG-PET for survival prediction in patients with head and neck squamous cell carcinoma treated with (chemo)radiation

    To assess (I) correlations between diffusion-weighted (DWI), intravoxel incoherent motion (IVIM), dynamic contrast-enhanced (DCE) MRI, and 18F-FDG-PET/CT imaging parameters capturing tumor characteristics and (II...

    Roland M. Martens, Thomas Koopman, Cristina Lavini, Meedie Ali in European Radiology (2021)

  7. Article

    Open Access

    Outcome prediction of head and neck squamous cell carcinoma by MRI radiomic signatures

    Head and neck squamous cell carcinoma (HNSCC) shows a remarkable heterogeneity between tumors, which may be captured by a variety of quantitative features extracted from diagnostic images, termed radiomics. Th...

    Steven W. Mes, Floris H. P. van Velden, Boris Peltenburg in European Radiology (2020)

  8. Article

    Open Access

    Predictive value of quantitative 18F-FDG-PET radiomics analysis in patients with head and neck squamous cell carcinoma

    Radiomics is aimed at image-based tumor phenoty**, enabling application within clinical-decision-support-systems to improve diagnostic accuracy and allow for personalized treatment. The purpose was to identi...

    Roland M. Martens, Thomas Koopman, Daniel P. Noij, Elisabeth Pfaehler in EJNMMI Research (2020)

  9. Article

    Open Access

    The spectral condition number plot for regularization parameter evaluation

    Many modern statistical applications ask for the estimation of a covariance (or precision) matrix in settings where the number of variables is larger than the number of observations. There exists a broad class...

    Carel F. W. Peeters, Mark A. van de Wiel in Computational Statistics (2020)

  10. Article

    Open Access

    Cross-cultural validation of the Functional Vision Questionnaire for Children and Young People (FVQ_CYP) with visual impairment in the Dutch population: challenges and opportunities

    To assess cross-cultural validity between Dutch and English versions of the FVQ_CYP, a patient-reported outcome measure developed in the United Kingdom (UK) for children and adolescents with (severe) visual im...

    Ellen B. M. Elsman, Valerija Tadić, Carel F. W. Peeters in BMC Medical Research Methodology (2019)

  11. Article

    Open Access

    Who provides care in the last year of life? A description of care networks of community-dwelling older adults in the Netherlands

    Home-based care networks differ in size and composition, but little is known about the characteristics of care networks for those nearing the end of their lives. This study aimed to identify different types of...

    Femmy M. Bijnsdorp, H. Roeline W. Pasman, Anneke L. Francke in BMC Palliative Care (2019)

  12. No Access

    Article

    Zorgnetwerken

    De meeste mensen willen tot het eind van hun leven thuis blijven. Om dat mogelijk te maken, is mantelzorg cruciaal. Maar welke mantelzorgers en andere zorgverleners zijn er eigenlijk betrokken bi...

    Femmy M. Bijnsdorp, Marjolein I. Broese van Groenou, Anneke L. Francke in Pallium (2018)

  13. No Access

    Chapter and Conference Paper

    Application of a New Ridge Estimator of the Inverse Covariance Matrix to the Reconstruction of Gene-Gene Interaction Networks

    A proper ridge estimator of the inverse covariance matrix is presented. We study the properties of this estimator in relation to other ridge-type estimators. In the context of Gaussian graphical modeling, we c...

    Wessel N. van Wieringen, Carel F. W. Peeters in Computational Intelligence Methods for Bio… (2015)

  14. No Access

    Article

    Methodological Issues in the Design of Online Surveys for Measuring Unethical Work Behavior: Recommendations on the Basis of a Split-Ballot Experiment

    In recent years, there has been an increasing interest in unethical work behavior. Several types of survey instruments to collect information about unethical work behavior are available. Nevertheless, to date ...

    Kristel Wouters, Jeroen Maesschalck, Carel F. W. Peeters in Journal of Business Ethics (2014)

  15. No Access

    Article

    Rotational Uniqueness Conditions Under Oblique Factor Correlation Metric

    In an addendum to his seminal 1969 article Jöreskog stated two sets of conditions for rotational identification of the oblique factor solution under utilization of fixed zero elements in the factor loadings ma...

    Carel F. W. Peeters in Psychometrika (2012)

  16. No Access

    Chapter

    Inequality Constrained Multilevel Models

    In many areas of research, datasets have a multilevel or hierarchical structure. By hierarchy we mean that units at a certain level are grouped or clustered into, or nested within, higher-level units. The “lev...

    Bernet Sekasanvu Kato, Carel F.W. Peeters in Bayesian Evaluation of Informative Hypotheses (2008)