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  1. Article

    Open Access

    Multi-faceted epigenetic dysregulation of gene expression promotes esophageal squamous cell carcinoma

    Epigenetic landscapes can shape physiologic and disease phenotypes. We used integrative, high resolution multi-omics methods to delineate the methylome landscape and characterize the oncogenic drivers of esoph...

    Wei Cao, Hayan Lee, Wei Wu, Aubhishek Zaman, Sean McCorkle in Nature Communications (2020)

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    Article

    RAS nucleotide cycling underlies the SHP2 phosphatase dependence of mutant BRAF-, NF1- and RAS-driven cancers

    Oncogenic alterations in the RAS/RAF/MEK/ERK pathway drive the growth of a wide spectrum of cancers. While BRAF and MEK inhibitors are efficacious against BRAFV600E-driven cancers, effective targeted therapies ar...

    Robert J. Nichols, Franziska Haderk, Carlos Stahlhut in Nature Cell Biology (2018)

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    Article

    A diverse community of jute (Corchorus spp.) endophytes reveals mutualistic host–microbe interactions

    Endophytes are plant-associated microbes that live within plants as an integral part of the host metabolism and function. This study aimed to identify the molecular and physiological characteristics of both cu...

    Rifat Ara Najnin, Farhana Shafrin, Ahsan Habib Polash in Annals of Microbiology (2015)

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    Article

    Kaposi’s sarcoma: a computational approach through protein–protein interaction and gene regulatory networks analysis

    Interactomic data for Kaposi’s Sarcoma Associated Herpes virus (KSHV)—the causative agent of vascular origin tumor called Kaposi’s sarcoma—is relatively modest to date. The objective of this study was to assig...

    Aubhishek Zaman, Md. Habibur Rahaman, Samsad Razzaque in Virus Genes (2013)

  5. No Access

    Article

    Structural, functional and molecular docking study to characterize GMI1 from Arabidopsis thaliana

    γ-irradiation and Mitomycin C Induced 1 (GMI1), is a member of the SMC-hinge domain-containing protein family that takes part in double stranded break repair mechanism in eukaryotic cells. In thi...

    Md. Rezaul Islam, Md. Ismail Hosen in Interdisciplinary Sciences: Computational … (2013)

  6. No Access

    Article

    A computational prediction of structure and function of novel homologue of Arabidopsis thaliana Vps51/Vps67 subunit in Corchorus olitorius

    Vps mediated vesicular transport is important for transferring macromolecules trapped inside a vesicle. Although highly abundant, Vps shows tremendous sequence variation among diverse array of species. However...

    Aubhishek Zaman, Nurun Nahar Fancy in Interdisciplinary Sciences: Computational … (2012)