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  1. Article

    Open Access

    Empowering standardization of cancer vaccines through ontology: enhanced modeling and data analysis

    The exploration of cancer vaccines has yielded a multitude of studies, resulting in a diverse collection of information. The heterogeneity of cancer vaccine data significantly impedes effective integration and...

    Jie Zheng, **ngxian Li, Anna Maria Masci, Hayleigh Kahn in Journal of Biomedical Semantics (2024)

  2. Article

    Open Access

    Ontological representation, modeling, and analysis of parasite vaccines

    Pathogenic parasites are responsible for multiple diseases, such as malaria and Chagas disease, in humans and livestock. Traditionally, pathogenic parasites have been largely an evasive topic for vaccine desig...

    Anthony Huffman, Xumeng Zhang, Meghana Lanka, Jie Zheng in Journal of Biomedical Semantics (2024)

  3. Article

    Open Access

    A comprehensive update on CIDO: the community-based coronavirus infectious disease ontology

    The current COVID-19 pandemic and the previous SARS/MERS outbreaks of 2003 and 2012 have resulted in a series of major global public health crises. We argue that in the interest of develo** effective and saf...

    Yongqun He, Hong Yu, Anthony Huffman, Asiyah Yu Lin in Journal of Biomedical Semantics (2022)

  4. Article

    Open Access

    CIDO ontology updates and secondary analysis of host responses to COVID-19 infection based on ImmPort reports and literature

    With COVID-19 still in its pandemic stage, extensive research has generated increasing amounts of data and knowledge. As many studies are published within a short span of time, we often lose an integrative and...

    Anthony Huffman, Anna Maria Masci, Jie Zheng in Journal of Biomedical Semantics (2021)

  5. Article

    Open Access

    CIDO, a community-based ontology for coronavirus disease knowledge and data integration, sharing, and analysis

    The Coronavirus Infectious Disease Ontology (CIDO) is a community-based ontology that supports coronavirus disease knowledge and data standardization, integration, sharing, and analysis.

    Yongqun He, Hong Yu, Edison Ong, Yang Wang, Yingtong Liu in Scientific Data (2020)