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  1. No Access

    Article

    Multiple sclerosis patient-derived spontaneous B cells have distinct EBV and host gene expression profiles in active disease

    Epstein–Barr virus (EBV) is an aetiologic risk factor for the development of multiple sclerosis (MS). However, the role of EBV-infected B cells in the immunopathology of MS is not well understood. Here we char...

    Samantha S. Soldan, Chenhe Su, Maria Chiara Monaco, Leena Yoon in Nature Microbiology (2024)

  2. Article

    Open Access

    Immunoglobulin G N-glycan markers of accelerated biological aging during chronic HIV infection

    People living with HIV (PLWH) experience increased vulnerability to premature aging and inflammation-associated comorbidities, even when HIV replication is suppressed by antiretroviral therapy (ART). However, ...

    Leila B. Giron, Qin Liu, Opeyemi S. Adeniji, **angfan Yin in Nature Communications (2024)

  3. Article

    Open Access

    Targeting branched N-glycans and fucosylation sensitizes ovarian tumors to immune checkpoint blockade

    Aberrant glycosylation is a crucial strategy employed by cancer cells to evade cellular immunity. However, it’s unclear whether homologous recombination (HR) status-dependent glycosylation can be therapeutical...

    Hao Nie, Pratima Saini, Taito Miyamoto, Li** Liao in Nature Communications (2024)

  4. Article

    Open Access

    Cell state dependent effects of Bmal1 on melanoma immunity and tumorigenicity

    The circadian clock regulator Bmal1 modulates tumorigenesis, but its reported effects are inconsistent. Here, we show that Bmal1 has a context-dependent role in mouse melanoma tumor growth. Loss of Bmal1 in YU...

    Xue Zhang, Shishir M. Pant, Cecily C. Ritch, Hsin-Yao Tang in Nature Communications (2024)

  5. Article

    Open Access

    A cyclin D1 intrinsically disordered domain accesses modified histone motifs to govern gene transcription

    The essential G1-cyclin, CCND1, is frequently overexpressed in cancer, contributing to tumorigenesis by driving cell-cycle progression. D-type cyclins are rate-limiting regulators of G1-S progression in mammalian...

    Xuanmao Jiao, Gabriele Di Sante, Mathew C. Casimiro, Agnes Tantos in Oncogenesis (2024)

  6. No Access

    Article

    Acetate acts as a metabolic immunomodulator by bolstering T-cell effector function and potentiating antitumor immunity in breast cancer

    Acetate metabolism is an important metabolic pathway in many cancers and is controlled by acetyl-CoA synthetase 2 (ACSS2), an enzyme that catalyzes the conversion of acetate to acetyl-CoA. While the metabolic ...

    Katelyn D. Miller, Seamus O’Connor, Katherine A. Pniewski, Toshitha Kannan in Nature Cancer (2023)

  7. Article

    Open Access

    The DACH1 gene is frequently deleted in prostate cancer, restrains prostatic intraepithelial neoplasia, decreases DNA damage repair, and predicts therapy responses

    Prostate cancer (PCa), the second leading cause of death in American men, includes distinct genetic subtypes with distinct therapeutic vulnerabilities. The DACH1 gene encodes a winged helix/Forkhead DNA-binding p...

    Zhi** Li, Xuanmao Jiao, A. Gordon Robertson, Gabriele Di Sante in Oncogene (2023)

  8. Article

    Open Access

    Type I interferon response in astrocytes promotes brain metastasis by enhancing monocytic myeloid cell recruitment

    Cancer metastasis to the brain is a significant clinical problem. Metastasis is the consequence of favorable interactions between invaded cancer cells and the microenvironment. Here, we demonstrate that cancer...

    Weili Ma, Maria Cecília Oliveira-Nunes, Ke Xu, Andrew Kossenkov in Nature Communications (2023)

  9. No Access

    Article

    Ferroptosis of tumour neutrophils causes immune suppression in cancer

    Ferroptosis is a non-apoptotic form of regulated cell death that is triggered by the discoordination of regulatory redox mechanisms culminating in massive peroxidation of polyunsaturated phospholipids. Ferropt...

    Rina Kim, Ayumi Hashimoto, Nune Markosyan, Vladimir A. Tyurin, Yulia Y. Tyurina in Nature (2022)

  10. No Access

    Article

    Stromal changes in the aged lung induce an emergence from melanoma dormancy

    Disseminated cancer cells from primary tumours can seed in distal tissues, but may take several years to form overt metastases, a phenomenon that is termed tumour dormancy. Despite its importance in metastasis...

    Mitchell E. Fane, Yash Chhabra, Gretchen M. Alicea, Devon A. Maranto in Nature (2022)

  11. Article

    Open Access

    The three-dimensional structure of Epstein-Barr virus genome varies by latency type and is regulated by PARP1 enzymatic activity

    Epstein-Barr virus (EBV) persists in human B-cells by maintaining its chromatinized episomes within the nucleus. We have previously shown that cellular factor Poly [ADP-ribose] polymerase 1 (PARP1) binds the E...

    Sarah M. Morgan, Hideki Tanizawa, Lisa Beatrice Caruso in Nature Communications (2022)

  12. Article

    Retraction Note: IspH inhibitors kill Gram-negative bacteria and mobilize immune clearance

    Kumar Sachin Singh, Rishabh Sharma, Poli Adi Narayana Reddy, Prashanthi Vonteddu in Nature (2021)

  13. Article

    Open Access

    Immune suppressive activity of myeloid-derived suppressor cells in cancer requires inactivation of the type I interferon pathway

    Myeloid-derived suppressor cells (MDSC) are pathologically activated neutrophils and monocytes with potent immune suppressive activity. These cells play an important role in accelerating tumor progression and ...

    Kevin Alicea-Torres, Emilio Sanseviero, Jun Gui, **yun Chen in Nature Communications (2021)

  14. No Access

    Article

    RETRACTED ARTICLE: IspH inhibitors kill Gram-negative bacteria and mobilize immune clearance

    Isoprenoids are vital for all organisms, in which they maintain membrane stability and support core functions such as respiration1. IspH, an enzyme in the methyl erythritol phosphate pathway of isoprenoid synthes...

    Kumar Sachin Singh, Rishabh Sharma, Poli Adi Narayana Reddy, Prashanthi Vonteddu in Nature (2021)

  15. Article

    Open Access

    Poly(ADP-ribose) polymerase 1 in genome-wide expression control in Drosophila

    Poly(ADP-ribose) polymerase 1 (PARP-1) is a nuclear enzyme involved in DNA repair and transcription regulation, among other processes. Malignant transformations, tumor progression, the onset of some neuropathi...

    Guillaume Bordet, Niraj Lodhi, Dan** Guo, Andrew Kossenkov in Scientific Reports (2020)

  16. Article

    Open Access

    Epigenetic specifications of host chromosome docking sites for latent Epstein-Barr virus

    Epstein-Barr virus (EBV) genomes persist in latently infected cells as extrachromosomal episomes that attach to host chromosomes through the tethering functions of EBNA1, a viral encoded sequence-specific DNA ...

    Kyoung-Dong Kim, Hideki Tanizawa, Alessandra De Leo in Nature Communications (2020)

  17. Article

    Open Access

    Involvement of condensin in cellular senescence through gene regulation and compartmental reorganization

    Senescence is induced by various stimuli such as oncogene expression and telomere shortening, referred to as oncogene-induced senescence (OIS) and replicative senescence (RS), respectively, and accompanied by ...

    Osamu Iwasaki, Hideki Tanizawa, Kyoung-Dong Kim, Andrew Kossenkov in Nature Communications (2019)

  18. Article

    Open Access

    ARID1A promotes genomic stability through protecting telomere cohesion

    ARID1A inactivation causes mitotic defects. Paradoxically, cancers with high ARID1A mutation rates typically lack copy number alterations (CNAs). Here, we show that ARID1A inactivation causes defects in telomere ...

    Bo Zhao, Jianhuang Lin, Lijie Rong, Shuai Wu, Zhong Deng in Nature Communications (2019)

  19. Article

    Author Correction: ATF4 couples MYC-dependent translational activity to bioenergetic demands during tumour progression

    An amendment to this paper has been published and can be accessed via a link at the top of the paper.

    Feven Tameire, Ioannis I. Verginadis, Nektaria Maria Leli in Nature Cell Biology (2019)

  20. No Access

    Article

    ATF4 couples MYC-dependent translational activity to bioenergetic demands during tumour progression

    The c-Myc oncogene drives malignant progression and induces robust anabolic and proliferative programmes leading to intrinsic stress. The mechanisms enabling adaptation to MYC-induced stress are not fully underst...

    Feven Tameire, Ioannis I. Verginadis, Nektaria Maria Leli in Nature Cell Biology (2019)

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