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Article
Open AccessMassive gene presence-absence variation shapes an open pan-genome in the Mediterranean mussel
The Mediterranean mussel Mytilus galloprovincialis is an ecologically and economically relevant edible marine bivalve, highly invasive and resilient to biotic and abiotic stressors causing recurrent massive morta...
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Article
Open AccessGenome-wide somatic variant calling using localized colored de Bruijn graphs
Reliable detection of somatic variations is of critical importance in cancer research. Here we present Lancet, an accurate and sensitive somatic variant caller, which detects SNVs and indels by jointly analyzi...
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Article
Open AccessExtreme genomic erosion after recurrent demographic bottlenecks in the highly endangered Iberian lynx
Genomic studies of endangered species provide insights into their evolution and demographic history, reveal patterns of genomic erosion that might limit their viability, and offer tools for their effective con...
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Article
Open AccessGenome and transcriptome analysis of the Mesoamerican common bean and the role of gene duplications in establishing tissue and temporal specialization of genes
Legumes are the third largest family of angiosperms and the second most important crop class. Legume genomes have been shaped by extensive large-scale gene duplications, including an approximately 58 million y...
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Article
Open AccessExon creation and establishment in human genes
A large proportion of species-specific exons are alternatively spliced. In primates, Alu elements play a crucial role in the process of exon creation but many new exons have appeared through other mechanisms. Des...