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  1. Article

    Open Access

    Rapid gene content turnover on the germline-restricted chromosome in songbirds

    The germline-restricted chromosome (GRC) of songbirds represents a taxonomically widespread example of programmed DNA elimination. Despite its apparent indispensability, we still know very little about the GRC...

    Stephen A. Schlebusch, Jakub Rídl, Manon Poignet in Nature Communications (2023)

  2. Article

    Open Access

    Genomic architecture of migration timing in a long-distance migratory songbird

    The impact of climate change on spring phenology poses risks to migratory birds, as migration timing is controlled predominantly by endogenous mechanisms. Despite recent advances in our understanding of the un...

    Evelien de Greef, Alexander Suh, Matt J. Thorstensen, Kira E. Delmore in Scientific Reports (2023)

  3. Article

    Open Access

    The genomic basis of the plant island syndrome in Darwin’s giant daisies

    The repeated, rapid and often pronounced patterns of evolutionary divergence observed in insular plants, or the ‘plant island syndrome’, include changes in leaf phenotypes, growth, as well as the acquisition o...

    José Cerca, Bent Petersen, José Miguel Lazaro-Guevara in Nature Communications (2022)

  4. Article

    Open Access

    Recurrent chromosome reshuffling and the evolution of neo-sex chromosomes in parrots

    The karyotype of most birds has remained considerably stable during more than 100 million years’ evolution, except for some groups, such as parrots. The evolutionary processes and underlying genetic mechanism ...

    Zhen Huang, Ivanete De O. Furo, **g Liu, Valentina Peona in Nature Communications (2022)

  5. Article

    Open Access

    Author Correction: Discovery and population genomics of structural variation in a songbird genus

    Matthias H. Weissensteiner, Ignas Bunikis, Ana Catalán in Nature Communications (2021)

  6. Article

    Open Access

    Author Correction: Dense sampling of bird diversity increases power of comparative genomics

    A Correction to this paper has been published: https://doi.org/10.1038/s41586-021-03473-8.

    Shaohong Feng, Josefin Stiller, Yuan Deng, Joel Armstrong, Qi Fang in Nature (2021)

  7. No Access

    Article

    Dense sampling of bird diversity increases power of comparative genomics

    Whole-genome sequencing projects are increasingly populating the tree of life and characterizing biodiversity14. Sparse taxon sampling has previously been proposed to confound phylogenetic inference5, and captur...

    Shaohong Feng, Josefin Stiller, Yuan Deng, Joel Armstrong, Qi Fang in Nature (2020)

  8. Article

    Open Access

    Publisher Correction: The tuatara genome reveals ancient features of amniote evolution

    An amendment to this paper has been published and can be accessed via a link at the top of the paper.

    Neil J. Gemmell, Kim Rutherford, Stefan Prost, Marc Tollis, David Winter in Nature (2020)

  9. Article

    Open Access

    The tuatara genome reveals ancient features of amniote evolution

    The tuatara (Sphenodon punctatus)—the only living member of the reptilian order Rhynchocephalia (Sphenodontia), once widespread across Gondwana1,2—is an iconic species that is endemic to New Zealand2,3. A key lin...

    Neil J. Gemmell, Kim Rutherford, Stefan Prost, Marc Tollis, David Winter in Nature (2020)

  10. Article

    Open Access

    Discovery and population genomics of structural variation in a songbird genus

    Structural variation (SV) constitutes an important type of genetic mutations providing the raw material for evolution. Here, we uncover the genome-wide spectrum of intra- and interspecific SV segregating in na...

    Matthias H. Weissensteiner, Ignas Bunikis, Ana Catalán in Nature Communications (2020)

  11. Article

    Open Access

    Programmed DNA elimination of germline development genes in songbirds

    In some eukaryotes, germline and somatic genomes differ dramatically in their composition. Here we characterise a major germline–soma dissimilarity caused by a germline-restricted chromosome (GRC) in songbirds...

    Cormac M. Kinsella, Francisco J. Ruiz-Ruano, Anne-Marie Dion-Côté in Nature Communications (2019)

  12. Article

    Open Access

    Evolution of heterogeneous genome differentiation across multiple contact zones in a crow species complex

    Uncovering the genetic basis of species diversification is a central goal in evolutionary biology. Yet, the link between the accumulation of genomic changes during population divergence and the evolutionary fo...

    Nagarjun Vijay, Christen M. Bossu, Jelmer W. Poelstra in Nature Communications (2016)

  13. Article

    Open Access

    Ancient horizontal transfers of retrotransposons between birds and ancestors of human pathogenic nematodes

    Parasite host switches may trigger disease emergence, but prehistoric host ranges are often unknowable. Lymphatic filariasis and loiasis are major human diseases caused by the insect-borne filarial nematodes Brug...

    Alexander Suh, Christopher C. Witt, Juliana Menger in Nature Communications (2016)

  14. Article

    Open Access

    Evolutionary analysis of the female-specific avian W chromosome

    The typically repetitive nature of the sex-limited chromosome means that it is often excluded from or poorly covered in genome assemblies, hindering studies of evolutionary and population genomic processes in ...

    Linnéa Smeds, Vera Warmuth, Paulina Bolivar, Severin Uebbing in Nature Communications (2015)

  15. Article

    The genome of a Mesozoic paleovirus reveals the evolution of hepatitis B viruses

    Paleovirology involves the identification of ancient endogenous viral elements within eukaryotic genomes. The evolutionary origins of the reverse-transcribing hepatitis B viruses, however, remain elusive, due ...

    Alexander Suh, Jürgen Brosius, Jürgen Schmitz, Jan Ole Kriegs in Nature Communications (2013)

  16. Article

    Open Access

    Mesozoic retroposons reveal parrots as the closest living relatives of passerine birds

    The relationships of passerines (such as the well-studied zebra finch) with non-passerine birds is one of the great enigmas of avian phylogenetic research, because decades of extensive morphological and molecu...

    Alexander Suh, Martin Paus, Martin Kiefmann, Gennady Churakov in Nature Communications (2011)