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  1. Article

    Open Access

    Pathling: analytics on FHIR

    Health data analytics is an area that is facing rapid change due to the acceleration of digitization of the health sector, and the changing landscape of health data and clinical terminology standards. Our rese...

    John Grimes, Piotr Szul, Alejandro Metke-Jimenez in Journal of Biomedical Semantics (2022)

  2. No Access

    Article

    The GA4GH Phenopacket schema defines a computable representation of clinical data

    Julius O. B. Jacobsen, Michael Baudis, Gareth S. Baynam in Nature Biotechnology (2022)

  3. Article

    Open Access

    Ontoserver: a syndicated terminology server

    Even though several high-quality clinical terminologies, such as SNOMED CT and LOINC, are readily available, uptake in clinical systems has been slow and many continue to capture information in plain text or u...

    Alejandro Metke-Jimenez, Jim Steel, David Hansen in Journal of Biomedical Semantics (2018)

  4. Article

    Open Access

    Towards achieving semantic interoperability of clinical study data with FHIR

    Observational clinical studies play a pivotal role in advancing medical knowledge and patient healthcare. To lessen the prohibitive costs of conducting these studies and support evidence-based medicine, result...

    Hugo Leroux, Alejandro Metke-Jimenez, Michael J. Lawley in Journal of Biomedical Semantics (2017)

  5. No Access

    Chapter and Conference Paper

    Oyster: A Tool for Fine-Grained Ontological Annotations in Free-Text

    Oyster is a web-based annotation tool that allows users to annotate free-text with respect to concepts defined in formal knowledge resources such as large domain ontologies. The tool has been explicitly desi...

    Hamed Tayebikhorami, Alejandro Metke-Jimenez in Information Retrieval Technology (2015)