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  1. Article

    Open Access

    Genome assemblies of 11 bamboo species highlight diversification induced by dynamic subgenome dominance

    Polyploidy (genome duplication) is a pivotal force in evolution. However, the interactions between parental genomes in a polyploid nucleus, frequently involving subgenome dominance, are poorly understood. Here...

    Peng-Fei Ma, Yun-Long Liu, Cen Guo, Guihua **, Zhen-Hua Guo, Ling Mao in Nature Genetics (2024)

  2. Article

    Open Access

    Distinctive plastome evolution in carnivorous angiosperms

    Independent origins of carnivory in multiple angiosperm families are fabulous examples of convergent evolution using a diverse array of life forms and habitats. Previous studies have indicated that carnivorous...

    Chao-Nan Fu, Susann Wicke, An-Dan Zhu, De-Zhu Li, Lian-Ming Gao in BMC Plant Biology (2023)

  3. No Access

    Article

    Fine-map** and candidate gene analysis of qFL-c10-1 controlling fiber length in upland cotton (Gossypium hirsutum L.)

    A fiber length QTL, qFL-c10-1, was fine-mapped to a 96.5-kb region containing one gene that has not been characterized in plants.

    Ruiting Zhang, Chao Shen, De Zhu, Yu Le, Nian Wang in Theoretical and Applied Genetics (2022)

  4. Article

    Open Access

    Plastome phylogenomic analysis reveals evolutionary divergences of Polypodiales suborder Dennstaedtiineae

    Polypodiales suborder Dennstaedtiineae contain a single family Dennstaedtiaceae, eleven genera, and about 270 species, and include some groups that were previously placed in Dennstaedtiaceae, Hypolepidaceae, M...

    **-Mei Lu, **n-Yu Du, Li-Yaung Kuo, Atsushi Ebihara, Leon R. Perrie in BMC Plant Biology (2022)

  5. No Access

    Article

    Single-base methylome analysis reveals dynamic changes of genome-wide DNA methylation associated with rapid stem growth of woody bamboos

    CG and CHG methylation levels in the rapid shoot growth stages (ST2–ST4) of woody bamboos were obviously decreased, which might regulate the internode elongation during rapid shoot growth, while CHH methylatio...

    Liang-Zhong Niu, Wei Xu, Peng-Fei Ma, Zhen-Hua Guo, De-Zhu Li in Planta (2022)

  6. No Access

    Article

    Genome-wide association map** for agronomic traits in an 8-way Upland cotton MAGIC population by SLAF-seq

    One sub-MAGIC population was genotyped using SLAF-seq, and QTLs and candidate genes for agronomic traits were identified in Upland cotton.

    Cong Huang, Chao Shen, Tianwang Wen, Bin Gao, De Zhu in Theoretical and Applied Genetics (2021)

  7. Article

    Open Access

    Differential expressions of anthocyanin synthesis genes underlie flower color divergence in a sympatric Rhododendron sanguineum complex

    The Rhododendron sanguineum complex is endemic to alpine mountains of northwest Yunnan and southeast Tibet of China. Varieties in this complex exhibit distinct flower colors even at the bud stage. However, the un...

    Lin-Jiang Ye, Michael Mӧller, Ya-Huang Luo, Jia-Yun Zou, Wei Zheng in BMC Plant Biology (2021)

  8. Article

    Open Access

    Reference genome sequences of two cultivated allotetraploid cottons, Gossypium hirsutum and Gossypium barbadense

    Allotetraploid cotton species (Gossypium hirsutum and Gossypium barbadense) have long been cultivated worldwide for natural renewable textile fibers. The draft genome sequences of both species are available but t...

    Maojun Wang, Lili Tu, Daojun Yuan, De Zhu, Chao Shen, Jianying Li in Nature Genetics (2019)

  9. Article

    Open Access

    Comparative transcriptomics identifies patterns of selection in roses

    Roses are important plants for human beings with pivotal economical and biological traits like continuous flowering, flower architecture, color and scent. Due to frequent hybridization and high genome heterozy...

    Shubin Li, Micai Zhong, Xue Dong, **aodong Jiang, Yuxing Xu, Yibo Sun in BMC Plant Biology (2018)

  10. Article

    Open Access

    Transcriptome analysis reveals crucial genes involved in the biosynthesis of nervonic acid in woody Malania oleifera oilseeds

    Malania oleifera Chun et Lee (Olacaceae), an evergreen broad-leaved woody tree native to southwest China, is an important oilseed tree. Its seed oil has a high level of nervonic acid (cis-tetracos-15-enoic acid, ...

    Tianquan Yang, Qian Yu, Wei Xu, De-zhu Li, Fu Chen, Aizhong Liu in BMC Plant Biology (2018)

  11. Article

    Open Access

    Negative correlation between rates of molecular evolution and flowering cycles in temperate woody bamboos revealed by plastid phylogenomics

    Heterogeneous rates of molecular evolution are universal across the tree of life, posing challenges for phylogenetic inference. The temperate woody bamboos (tribe Arundinarieae, Poaceae) are noted for their ex...

    Peng-Fei Ma, Maria S. Vorontsova, Olinirina Prisca Nanjarisoa in BMC Plant Biology (2017)

  12. Article

    Open Access

    Towards a comprehensive phylogeny of the large temperate genus Pedicularis (Orobanchaceae), with an emphasis on species from the Himalaya-Hengduan Mountains

    Striking interspecific variations in floral traits of the large temperate genus Pedicularis have given rise to controversies concerning infra-generic classifications. To date, phylogenetic relationships within th...

    Wen-Bin Yu, Min-Lu Liu, Hong Wang, Robert R. Mill, Richard H. Ree in BMC Plant Biology (2015)

  13. Article

    Open Access

    The evolution of floral deception in Epipactis veratrifolia (Orchidaceae): from indirect defense to pollination

    It is estimated that floral deception has evolved in at least 7500 species of angiosperms, of which two thirds are orchids. Epipactis veratrifolia (Orchidaceae) is a model system of aphid mimicry as aphidophagous...

    **ao-Hua **, Zong-**n Ren, Song-Zhi Xu, Hong Wang, De-Zhu Li in BMC Plant Biology (2014)

  14. Article

    Extended expression of B-class MADS-box genes in the paleoherb Asarum caudigerum

    Asarum caudigerum (Aristolochiaceae) is a paleoherb species that is important for research in origin and evolution of angiosperm flowers due to its basal position in the angiosperm phylog...

    Yin-He Zhao, Michael Möller, Jun-Bo Yang, Ting-Song Liu, **-Feng Zhao in Planta (2010)