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  1. Imaging Cell Signaling in Tissues Using the IBEX Method

    The study of cell signaling within tissues can be enhanced using highly multiplexed immunohistochemistry to localize the presence and spatial...
    Yuxuan Meng, Changtai Li, ... Colin J. Chu in Imaging Cell Signaling
    Protocol 2024
  2. In Situ Imaging of Proteins Using DNA-PAINT Super-Resolution Microscopy

    The spatial resolution of conventional light microscopy is restricted by the diffraction limit to hundreds of nanometers. Super-resolution microscopy...
    Florian Schueder, Ralf Jungmann in Imaging Cell Signaling
    Protocol 2024
  3. Deep Learning-Based Cell Tracking in Deforming Organs and Moving Animals

    Cell tracking is an essential step in extracting cellular signals from moving cells, which is vital for understanding the mechanisms underlying...
    Chentao Wen in Imaging Cell Signaling
    Protocol 2024
  4. Isolation and Flow Cytometry Analysis of Macrophages from White Adipose Tissue

    Macrophages are one of the prominent leukocyte populations in white adipose tissue (WAT) and play an important role during WAT homeostasis and...
    Dalila Juliana Silva Ribeiro, Seniz Yüksel, ... Dagmar Wachten in Tissue-Resident Macrophages
    Protocol 2024
  5. Combined Host-Pathogen Fate Map** to Investigate Lung Macrophages in Viral Infection

    Macrophage identity, as defined by epigenetic, transcriptional, proteomic, and functional programs, is greatly impacted by cues originating from the...
    Sebastian Baasch, Julia Henschel, Philipp Henneke in Tissue-Resident Macrophages
    Protocol 2024
  6. Monitoring of Inflammasome Activation of Macrophages and Microglia In Vitro, Part 2: Assessing Inflammasome Activation

    InflammasomesInflammasomes are macromolecular complexes that assemble upon the detection of cytoplasmic pathogen-associated or danger-associated...
    Marta Lovotti, Matthew S. J. Mangan, ... Eicke Latz in Tissue-Resident Macrophages
    Protocol 2024
  7. Visualization of a Cell Wall Hydrolase Inhibitor in Fusobacterium nucleatum by Immunofluorescence Microscopy

    Innately present in tears, saliva and mucosal secretions, lysozyme provides a critical defensive strategy to the host by cleaving the...
    Kevin To, Timmie Britton, Hung Ton-That in The Bacterial Cell Wall
    Protocol 2024
  8. A Three-Dimensional Trophoblast Invasion Microfluidic Platform for Toxicological Screening

    To improve our understanding of human placental function and placental cell responses to pregnancy stressors, the development of in vitro models that...
    Yong Pu, Almudena Veiga-Lopez in Trophoblasts
    Protocol 2024
  9. Precision-Cut Slice Culture Method for Rat Placenta

    Organotypic slice cultures provide several advantages over primary and cell line culture models. Unlike monolayer cultures, organotypic slice...
    Fusun Gundogan, Jeffrey Gilligan, Suzanne de la Monte in Trophoblasts
    Protocol 2024
  10. Three-Dimensional In Vitro Human Placental Organoids from Mononuclear Villous Trophoblasts or Trophoblast Stem Cells to Understand Trophoblast Dysfunction in Fetal Growth Restriction

    The placentaPlacenta plays a critical role in the efficient delivery of nutrients and oxygen from mother to fetus to maintain normal fetal growth....
    Cherry Sun, Joanna L. James, Padma Murthi in Trophoblasts
    Protocol 2024
  11. Expansion Microscopy of Ciliary Proteins

    Label-retention expansion microscopy (LR-ExM) is a sample preparation technique, which embeds the cells or tissues in a swellable hydrogel and...
    Sohyeon Park, **aoyu Shi in Cilia
    Protocol 2024
  12. Structural Analysis of Sperm Centrioles Using N-STORM

    A prominent technical barrier when imaging swimming sperm is capturing a singular sperm cell’s head and tail position simultaneously at a high...
    Abigail Royfman, Sushil Khanal, Tomer Avidor-Reiss in Cilia
    Protocol 2024
  13. A Novel Sandwich Method for Serial Block Face SEM Imaging of Airway Multiciliated Epithelium

    Volume electron microscopy technologies such as serial block face scanning electron microscopy (SBF-SEM) allow the characterization of tissue...
    Nobuhiro Morone, Maria Guerra Martin, ... Jaime Llodra Gonzalez in Cilia
    Protocol 2024
  14. Computational Modeling and Simulation of the Fibrotic Human Atria

    Patient-specific modeling of atrial electrical activity enables the execution of simulations that can provide mechanistic insights and provide novel...
    Savannah F. Bifulco, Patrick M. Boyle in Familial Cardiomyopathies
    Protocol 2024
  15. Whole-Mount Immunofluorescence Staining to Visualize Cell Cycle Progression in Mouse Oocyte Meiosis

    Whole-mount immunofluorescence allows direct visualization of the cellular architecture within cells. Here, we apply this technique to mouse oocytes...
    Safia El Jailani, Katja Wassmann, Sandra A. Touati in Cell Cycle Control
    Protocol 2024
  16. Develo** a Prospective Gestational Lyme Disease Study

    Lyme disease in pregnancy is understudied. The few available reports of Borrelia infection during pregnancy collecting clinical outcomes, with or...
    Graham McLennan, Suzanne E. Dale, ... Stanley J. Naides in Borrelia burgdorferi
    Protocol 2024
  17. Identifying Transmembrane Interactions in Receptor Protein Tyrosine Phosphatase Homodimerization and Heterodimerization

    Receptor protein tyrosine phosphatases (RPTPs) are one of the key regulators of receptor tyrosine kinases (RTKs) and therefore play a critical role...
    Sophie Rizzo, Damien Thévenin in Protein Tyrosine Phosphatases
    Protocol 2024
  18. Alpha-1-Antitrypsin (A1AT) Proteoty** by LC-MS/MS

    The diagnosis of alpha-1-antitrypsin (A1AT) deficiency is established by quantitation of protein concentration in serum (immunoassay) followed by...
    Jennifer Kemp, Paula M. Ladwig, Melissa R. Snyder in Alpha-1 Antitrypsin
    Protocol 2024
  19. Isolation, Culture, and Microscopic Imaging of Guinea Pig Primary Gastric Tissue Cells

    In this chapter, the procedure of isolation and propagation of guinea pig gastric tissue primary cells in cell culture in vitro is presented....
    Weronika Gonciarz, Magdalena Chmiela in Epithelial Cell Culture
    Protocol 2024
  20. Manipulation of Proteostasis Networks in Transgenic ZAAT Zebrafish via CRISPR–Cas9 Gene Editing

    The CRISPR–Cas9 genome editing system is used to induce mutations in genes of interest resulting in the loss of functional protein. A transgenic...
    Connie Fung, Lee B. Miles, ... Phillip I. Bird in Alpha-1 Antitrypsin
    Protocol 2024
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