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  1. Virtual Screening Process: A Guide in Modern Drug Designing

    Due to its capacity to drastically cut the cost and time necessary for experimental screening of compounds, virtual screening (VS) has grown to be a...
    Umesh Panwar, Aarthy Murali, ... Sanjeev Kumar Singh in Computational Drug Discovery and Design
    Protocol 2024
  2. Systems Biology Approach to Analyze Microarray Datasets for Identification of Disease-Causing Genes: Case Study of Oral Squamous Cell Carcinoma

    The discovery of potential disease-causing genes can aid medical progress. The post-genomic era has made this a more difficult task. Modern...
    Jyotsna Choubey, Olaf Wolkenhauer, Tanushree Chatterjee in Reverse Engineering of Regulatory Networks
    Protocol 2024
  3. New Insights into Clinical Management for Sickle Cell Disease: Uncovering the Significant Pathways Affected by the Involvement of Sickle Cell Disease

    One of the severe monogenic conditions with the highest prevalence in the globe is sickle cell disease. Although the significance of chronic anemia,...
    Usha Chouhan, Trilok Janghel, ... Jyoti Kant Choudhari in Reverse Engineering of Regulatory Networks
    Protocol 2024
  4. Big Data in Bioinformatics and Computational Biology: Basic Insights

    The human genome was first sequenced in 1994. It took 10 years of cooperation between numerous international research organizations to reveal a...
    Aanchal Gupta, Shubham Kumar, Ashwani Kumar in Reverse Engineering of Regulatory Networks
    Protocol 2024
  5. Identification of Mycoviruses by dsRNA Extraction

    Mycoviruses exist in all major groups of fungi. With the continuous development of science and technology, the methods of studying viruses are...
    Yanfei Wang, Clement Nzabanita, Lihua Guo in Double-Stranded RNA
    Protocol 2024
  6. In Vivo Production of dsRNA Using Bacteriophage Ï•6 in Pseudomonas syringae Cit7 Cells

    RNA interference (RNAi), also known as post-transcriptional gene silencing (PTGS), is one of the emerging genetic engineering techniques to...
    **guang Yang in Double-Stranded RNA
    Protocol 2024
  7. Application of dsRNA for Fungi Disease Management Sclerotinia sclerotiorum and Botrytis cinerea

    Sclerotinia sclerotiorum and Botrytis cinerea are two closely related necrotrophic plant pathogenic fungi that have garnered significant attention...
    Tao Tang, Yumeng Wang, Dongdong Niu in Double-Stranded RNA
    Protocol 2024
  8. Detection of dsRNA with Fluorescence In Situ Hybridization (FISH)

    Fluorescence in situ hybridization (FISH) is a powerful technique used for detecting and localizing specific nucleic acid sequences in cells or...
    Wenling Zhou, Juan Huang, ... **aoming Zhang in Double-Stranded RNA
    Protocol 2024
  9. Multiparametric Analysis of Apoptosis by Flow Cytometry

    Flow cytometry remains the most widely used method for detecting and quantifying apoptosis and related forms of cell death in mammalian cells. The...
    William G. Telford in Flow Cytometry Protocols
    Protocol 2024
  10. Cytometry in High-Containment Laboratories

    The emergence of new pathogens continues to fuel the need for advanced high-containment laboratories across the globe. Here we explore challenges and...
    Melanie Cohen, Julie Laux, Iyadh Douagi in Flow Cytometry Protocols
    Protocol 2024
  11. Hi-M: A Multiplex Oligopaint FISH Method to Capture Chromatin Conformations In Situ and Accompanying Open-Source Acquisition Software

    The simultaneous observation of three-dimensional (3D) chromatin structure and transcription in single cells is critical to understand how DNA is...
    Jean-Bernard Fiche, Marie Schaeffer, ... Marcelo Nollmann in Fluorescence In Situ Hybridization (FISH)
    Protocol 2024
  12. hcHCR: High-Throughput Single-Cell Imaging of RNA in Human Primary Immune Cells

    Functional genomics and chemical screens can identify and characterize novel cellular factors regulating signaling networks and chemical tools to...
    Manasi Gadkari, **g Sun, ... Gianluca Pegoraro in Fluorescence In Situ Hybridization (FISH)
    Protocol 2024
  13. Computer-Aided Drug Discovery and Design: Recent Advances and Future Prospects

    Computer-aided drug discovery and design involve the use of information technologies to identify and develop, on a rational ground, chemical...
    Protocol 2024
  14. Molecular Dynamics and Other HPC Simulations for Drug Discovery

    High performance computing (HPC) is taking an increasingly important place in drug discovery. It makes possible the simulation of complex biochemical...
    Martin Kotev, Constantino Diaz Gonzalez in High Performance Computing for Drug Discovery and Biomedicine
    Protocol 2024
  15. Hubs and Bottlenecks in Protein-Protein Interaction Networks

    Protein-protein interaction networks (PPINs) represent the physical interactions among proteins in a cell. These interactions are critical in all...
    Chandramohan Nithya, Manjari Kiran, Hampapathalu Adimurthy Nagarajaram in Reverse Engineering of Regulatory Networks
    Protocol 2024
  16. Inference of Dynamic Growth Regulatory Network in Cancer Using High-Throughput Transcriptomic Data

    Growth is regulated by gene expression variation at different developmental stages of biological processes such as cell differentiation, disease...
    Aparna Chaturvedi, Anup Som in Reverse Engineering of Regulatory Networks
    Protocol 2024
  17. Systems Biology Approaches to Understanding COVID-19 Spread in the Population

    In essence, the COVID-19 pandemic can be regarded as a systems biology problem, with the entire world as the system, and the human population as the...
    Sofija Marković, Igor Salom, Marko Djordjevic in Systems Biology
    Protocol 2024
  18. Optical Estimation of Bioelectric Patterns in Living Embryos

    Fluorescent lifetime imaging (FLIM) is a powerful tool for visualizing physiological parameters in vivo. We present here a 3-dye strategy for map**...
    Patrick McMillen, Michael Levin in Systems Biology
    Protocol 2024
  19. Identifying Key In Silico Knockout for Enhancement of Limonene Yield Through Dynamic Metabolic Modelling

    Living cells display dynamic and complex behaviors. To understand their response and to infer novel insights not possible with traditional...
    Jasmeet Kaur Khanijou, Yan Ting Hee, Kumar Selvarajoo in Systems Biology
    Protocol 2024
  20. Co-immunoprecipitation-Based Isolation of Double-Stranded RNA-Associated Protein Complexes in Nicotiana benthamiana

    Double-stranded RNA (dsRNA) is associated with most viral infections, and is generated in host cells during viral replication. Viral RNA replication...
    Zhaoxing Jia, Jian** Chen, ... Guanwei Wu in Double-Stranded RNA
    Protocol 2024
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