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    Systems Biology: Identifiability Analysis and Parameter Identification via Systems-Biology-Informed Neural Networks

    The dynamics of systems biological processes are usually modeled by a system of ordinary differential equations (ODEs) with many unknown parameters that need to be inferred from noisy and sparse measurements. ...

    Mitchell Daneker, Zhen Zhang in Computational Modeling of Signaling Networ… (2023)

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    PAL-Mediated Ligation for Protein and Cell-Surface Modification

    Peptidyl Asx-specific ligases (PALs) effect peptide ligation by catalyzing transpeptidation reactions at Asn/Asp-peptide bonds. Owing to their high efficiency and mild aqueous reaction conditions, these ligase...

    Zhen Wang, Dingpeng Zhang, Side Hu, **aobao Bi, Julien Lescar in Chemical Protein Synthesis (2022)

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    Detection of Uveal Melanoma by Multiplex Immunoassays of Serum Biomarkers

    Multiplex immunoassays simultaneously measure multiple analytes in a single sample providing quantitative data via parallel analyses, which is especially suitable for serum biomarker verification and validatio...

    ** Song, Zhen Zhang, Daniel W. Chan in Melanoma (2021)

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    Development of Transgenic CryIA(c) + GNA Cotton Plants via Pollen-Tube Pathway Method Confers Resistance to Helicoverpa armigera and Aphis gossypii Glover

    Elite cotton cultivar Sumian16 was transformed with p7RPSBK-mGNA-NPTII containing Bt (CryIA(c)), Galanthus nivalis agglutinin (GNA) resistance genes, and selectable marker NptII gene via the pollen-tube pathway m...

    Zhi Liu, Zhen Zhu, Tianzhen Zhang in Transgenic Cotton (2019)

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    Synthesis and Evaluation of Novel Neamine–Nucleoside Conjugates as Potential Antibiotic Targets for Escherichia coli 16S Ribosomal RNA

    Based on the nucleobase rich character of the binding pocket of A-site 16S ribosomal RNA of Escherichia coli, it was proposed that the neamine moiety of synthesized Neamine–nucleoside conjugates could bind to the...

    Zhen-Jun Yang, Maria-Grazia Concilio, Vasudevan Ramesh, Li-He Zhang in Epitranscriptomics (2019)

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    Using the CPTAC Assay Portal to Identify and Implement Highly Characterized Targeted Proteomics Assays

    The Clinical Proteomic Tumor Analysis Consortium (CPTAC) of the National Cancer Institute (NCI) has launched an Assay Portal (http://assays.cancer.gov) to serve as...

    Jeffrey R. Whiteaker, Goran N. Halusa in Quantitative Proteomics by Mass Spectromet… (2016)

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    Efficient Analysis Methods in Synthetic Biology

    This chapter describes new analysis and verification techniques for synthetic genetic circuits. In particular, it applies stochastic model checking techniques to models of genetic circuits in order to ensure that...

    Curtis Madsen, Chris Myers, Nicholas Roehner in Computational Methods in Synthetic Biology (2015)