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  1. Article

    SARS-CoV-2 infection of the oral cavity and saliva

    Despite signs of infection—including taste loss, dry mouth and mucosal lesions such as ulcerations, enanthema and macules—the involvement of the oral cavity in coronavirus disease 2019 (COVID-19) is poorly und...

    Ni Huang, Paola Pérez, Takafumi Kato, Yu Mikami, Kenichi Okuda in Nature Medicine (2021)

  2. Article

    Open Access

    Transcriptomic evidence that von Economo neurons are regionally specialized extratelencephalic-projecting excitatory neurons

    von Economo neurons (VENs) are bipolar, spindle-shaped neurons restricted to layer 5 of human frontoinsula and anterior cingulate cortex that appear to be selectively vulnerable to neuropsychiatric and neurode...

    Rebecca D. Hodge, Jeremy A. Miller, Mark Novotny in Nature Communications (2020)

  3. No Access

    Article

    Transcriptomic and morphophysiological evidence for a specialized human cortical GABAergic cell type

    We describe convergent evidence from transcriptomics, morphology, and physiology for a specialized GABAergic neuron subtype in human cortex. Using unbiased single-nucleus RNA sequencing, we identify ten GABAer...

    Eszter Boldog, Trygve E. Bakken, Rebecca D. Hodge, Mark Novotny in Nature Neuroscience (2018)

  4. Article

    Author Correction: L1-associated genomic regions are deleted in somatic cells of the healthy human brain

    In the version of this article initially published, NIH grant U01 MH106882 to F.H.G. was missing from the Acknowledgments. The error has been corrected in the HTML and PDF versions of the article.

    Jennifer A Erwin, Apuã C M Paquola, Tatjana Singer, Iryna Gallina in Nature Neuroscience (2018)

  5. Article

    Open Access

    Cell type discovery and representation in the era of high-content single cell phenoty**

    A fundamental characteristic of multicellular organisms is the specialization of functional cell types through the process of differentiation. These specialized cell types not only characterize the normal func...

    Trygve Bakken, Lindsay Cowell, Brian D. Aevermann, Mark Novotny in BMC Bioinformatics (2017)

  6. Article

    Correction: Corrigendum: L1-associated genomic regions are deleted in somatic cells of the healthy human brain

    Nat. Neurosci. 19, 1583–1591 (2016); published online 12 September 2016; corrected after print 13 July 2017 In the version of this article initially published, NIH grant T32 CA009370 to F.H.G. was missing from...

    Jennifer A Erwin, Apuã C M Paquola, Tatjana Singer, Iryna Gallina in Nature Neuroscience (2017)

  7. Article

    Open Access

    Correction: Corrigendum: Nuclear RNA-seq of single neurons reveals molecular signatures of activation

    Nature Communications 7: Article number: 11022 (2016); Published 19 April 2016; Updated 17 March 2017 An incorrect version of Supplementary Data 1, in which normalized counts were analysed instead of raw count...

    Benjamin Lacar, Sara B. Linker, Baptiste N. Jaeger in Nature Communications (2017)

  8. No Access

    Article

    L1-associated genomic regions are deleted in somatic cells of the healthy human brain

    The healthy human brain is a mosaic of varied genomes. Using a single cell sequencing approach targeting L1 elements, the authors show that the contribution of L1 to somatic mosaicism goes beyond retrotranspos...

    Jennifer A Erwin, Apuã C M Paquola, Tatjana Singer, Iryna Gallina in Nature Neuroscience (2016)

  9. Article

    Open Access

    Correction: Corrigendum: Nuclear RNA-seq of single neurons reveals molecular signatures of activation

    Nature Communications 7: Article number:11022 (2016); Published 19 April 2016; Updated 14 June 2016 In the original version of this Article, the middle names or initials of the authors Suguna Rani Krishnaswami...

    Benjamin Lacar, Sara B. Linker, Baptiste N. Jaeger in Nature Communications (2016)

  10. Article

    Open Access

    Nuclear RNA-seq of single neurons reveals molecular signatures of activation

    Single-cell sequencing methods have emerged as powerful tools for identification of heterogeneous cell types within defined brain regions. Application of single-cell techniques to study the transcriptome of ac...

    Benjamin Lacar, Sara B. Linker, Baptiste N. Jaeger in Nature Communications (2016)

  11. No Access

    Article

    Using single nuclei for RNA-seq to capture the transcriptome of postmortem neurons

    This protocol describes how to sequence the transcriptome from a single nucleus. It is particularly suited to cell types that are difficult to isolate as intact whole cells, such as neurons.

    Suguna Rani Krishnaswami, Rashel V Grindberg, Mark Novotny in Nature Protocols (2016)

  12. No Access

    Article

    Efficient de novo assembly of single-cell bacterial genomes from short-read data sets

    DNA can be amplified and sequenced from a single cell, but unevenness of the sequence coverage complicates efforts to assemble a high-quality genome. Chitsaz et al. devise an algorithm to address this problem and...

    Hamidreza Chitsaz, Joyclyn L Yee-Greenbaum, Glenn Tesler in Nature Biotechnology (2011)

  13. No Access

    Article

    A modified walking rhythm employed during righting behavior in the cockroachGromphadorhina portentosa

    Electromyograms were recorded from leg muscles of the cockroachGromphadorhina during walking and righting under free-ranging and tethered conditions. Two muscles which are essentially synergistic during walking b...

    Elizabeth Sherman, Mark Novotny, Jeffrey M. Camhi in Journal of comparative physiology (1977)